Replace Nan with 0 at where feature is missing in dataframe












-2















I am working on a dataset with missing values. The head of the dataset looks like this:



+1 1:0.2 2:0.7 3:-1.2 4:0.5
-1 1:0.9 3:0.1 4:0.8
-1 1:-0.1 2:0.1 4:1.0
+1 2:0.6 3:-1.0


The first column is the label of the data, and the number in front of the colon is the index of the feature. Some features are missing at some rows. So when I import the data using the following code,



df = pandas.read_csv('dataset',header=None,sep = 's+|:',engine='python',dtype=float)


I get a dataframe looks like



    0       1       2       3       4       5       6       7       8
0 1.0 1.0 0.2 2.0 0.7 3.0 -1.2 4.0 0.5
1 -1.0 1.0 0.9 3.0 0.1 4.0 0.8 NaN NaN
2 -1.0 1.0 -0.1 2.0 0.1 4.0 1.0 NaN NaN
3 1.0 2.0 0.6 3.0 -1.0 NaN NaN NaN NaN


I want to replace the NaNs with 0s in the correct place. But if I use df.fillna(0), I will replace the NaN at the end of each row, which looks like



    0       1       2       3       4       5       6       7       8
0 1.0 1.0 0.2 2.0 0.7 3.0 -1.2 4.0 0.5
1 -1.0 1.0 0.9 3.0 0.1 4.0 0.8 0.0 0.0
2 -1.0 1.0 -0.1 2.0 0.1 4.0 1.0 0.0 0.0
3 1.0 2.0 0.6 3.0 -1.0 0.0 0.0 0.0 0.0


What I really want is a dataframe looks like this,



    0       1       2       3       4       5       6       7       8
0 1.0 1.0 0.2 2.0 0.7 3.0 -1.2 4.0 0.5
1 -1.0 1.0 0.9 0.0 0.0 3.0 0.1 4.0 0.8
2 -1.0 1.0 -0.1 2.0 0.1 0.0 0.0 4.0 1.0
3 1.0 0.0 0.0 2.0 0.6 3.0 -1.0 0.0 0.0


So after I drop the index I should have



    0       1       2       3       4     
0 1.0 0.2 0.7 -1.2 0.5
1 -1.0 0.9 0.0 0.1 0.8
2 -1.0 -0.1 0.1 0.0 1.0
3 1.0 0.0 0.6 -1.0 0.0









share|improve this question




















  • 3





    Your question is confusing. You say you want to replace the NaNs with 0, but you say that fillna(0) replaces the NaNs with 0, and you don't want that. Are you instead looking for dropna(axis=1)?

    – G. Anderson
    Nov 15 '18 at 17:52








  • 1





    Can you double check your df you posted under "What I really want is a dataframe to that looks like this"? Not sure how you went from 9 -> 5 columns

    – Capn Jack
    Nov 15 '18 at 17:52








  • 1





    @CapnJack, also different values in some of the columns

    – G. Anderson
    Nov 15 '18 at 17:53








  • 1





    @BrianJoseph, that sounds like dropna() with extra steps. Looking at he values, it seems like OP wants to shift values from the ends of the rows into earlier columns...flagged for being unclear

    – G. Anderson
    Nov 15 '18 at 17:57






  • 1





    I think in each row of input the number in front of the : is supposed to be the correct column for the value after it, so pandas.read_csv is probably the problem here.

    – BurningKarl
    Nov 15 '18 at 18:09
















-2















I am working on a dataset with missing values. The head of the dataset looks like this:



+1 1:0.2 2:0.7 3:-1.2 4:0.5
-1 1:0.9 3:0.1 4:0.8
-1 1:-0.1 2:0.1 4:1.0
+1 2:0.6 3:-1.0


The first column is the label of the data, and the number in front of the colon is the index of the feature. Some features are missing at some rows. So when I import the data using the following code,



df = pandas.read_csv('dataset',header=None,sep = 's+|:',engine='python',dtype=float)


I get a dataframe looks like



    0       1       2       3       4       5       6       7       8
0 1.0 1.0 0.2 2.0 0.7 3.0 -1.2 4.0 0.5
1 -1.0 1.0 0.9 3.0 0.1 4.0 0.8 NaN NaN
2 -1.0 1.0 -0.1 2.0 0.1 4.0 1.0 NaN NaN
3 1.0 2.0 0.6 3.0 -1.0 NaN NaN NaN NaN


I want to replace the NaNs with 0s in the correct place. But if I use df.fillna(0), I will replace the NaN at the end of each row, which looks like



    0       1       2       3       4       5       6       7       8
0 1.0 1.0 0.2 2.0 0.7 3.0 -1.2 4.0 0.5
1 -1.0 1.0 0.9 3.0 0.1 4.0 0.8 0.0 0.0
2 -1.0 1.0 -0.1 2.0 0.1 4.0 1.0 0.0 0.0
3 1.0 2.0 0.6 3.0 -1.0 0.0 0.0 0.0 0.0


What I really want is a dataframe looks like this,



    0       1       2       3       4       5       6       7       8
0 1.0 1.0 0.2 2.0 0.7 3.0 -1.2 4.0 0.5
1 -1.0 1.0 0.9 0.0 0.0 3.0 0.1 4.0 0.8
2 -1.0 1.0 -0.1 2.0 0.1 0.0 0.0 4.0 1.0
3 1.0 0.0 0.0 2.0 0.6 3.0 -1.0 0.0 0.0


So after I drop the index I should have



    0       1       2       3       4     
0 1.0 0.2 0.7 -1.2 0.5
1 -1.0 0.9 0.0 0.1 0.8
2 -1.0 -0.1 0.1 0.0 1.0
3 1.0 0.0 0.6 -1.0 0.0









share|improve this question




















  • 3





    Your question is confusing. You say you want to replace the NaNs with 0, but you say that fillna(0) replaces the NaNs with 0, and you don't want that. Are you instead looking for dropna(axis=1)?

    – G. Anderson
    Nov 15 '18 at 17:52








  • 1





    Can you double check your df you posted under "What I really want is a dataframe to that looks like this"? Not sure how you went from 9 -> 5 columns

    – Capn Jack
    Nov 15 '18 at 17:52








  • 1





    @CapnJack, also different values in some of the columns

    – G. Anderson
    Nov 15 '18 at 17:53








  • 1





    @BrianJoseph, that sounds like dropna() with extra steps. Looking at he values, it seems like OP wants to shift values from the ends of the rows into earlier columns...flagged for being unclear

    – G. Anderson
    Nov 15 '18 at 17:57






  • 1





    I think in each row of input the number in front of the : is supposed to be the correct column for the value after it, so pandas.read_csv is probably the problem here.

    – BurningKarl
    Nov 15 '18 at 18:09














-2












-2








-2








I am working on a dataset with missing values. The head of the dataset looks like this:



+1 1:0.2 2:0.7 3:-1.2 4:0.5
-1 1:0.9 3:0.1 4:0.8
-1 1:-0.1 2:0.1 4:1.0
+1 2:0.6 3:-1.0


The first column is the label of the data, and the number in front of the colon is the index of the feature. Some features are missing at some rows. So when I import the data using the following code,



df = pandas.read_csv('dataset',header=None,sep = 's+|:',engine='python',dtype=float)


I get a dataframe looks like



    0       1       2       3       4       5       6       7       8
0 1.0 1.0 0.2 2.0 0.7 3.0 -1.2 4.0 0.5
1 -1.0 1.0 0.9 3.0 0.1 4.0 0.8 NaN NaN
2 -1.0 1.0 -0.1 2.0 0.1 4.0 1.0 NaN NaN
3 1.0 2.0 0.6 3.0 -1.0 NaN NaN NaN NaN


I want to replace the NaNs with 0s in the correct place. But if I use df.fillna(0), I will replace the NaN at the end of each row, which looks like



    0       1       2       3       4       5       6       7       8
0 1.0 1.0 0.2 2.0 0.7 3.0 -1.2 4.0 0.5
1 -1.0 1.0 0.9 3.0 0.1 4.0 0.8 0.0 0.0
2 -1.0 1.0 -0.1 2.0 0.1 4.0 1.0 0.0 0.0
3 1.0 2.0 0.6 3.0 -1.0 0.0 0.0 0.0 0.0


What I really want is a dataframe looks like this,



    0       1       2       3       4       5       6       7       8
0 1.0 1.0 0.2 2.0 0.7 3.0 -1.2 4.0 0.5
1 -1.0 1.0 0.9 0.0 0.0 3.0 0.1 4.0 0.8
2 -1.0 1.0 -0.1 2.0 0.1 0.0 0.0 4.0 1.0
3 1.0 0.0 0.0 2.0 0.6 3.0 -1.0 0.0 0.0


So after I drop the index I should have



    0       1       2       3       4     
0 1.0 0.2 0.7 -1.2 0.5
1 -1.0 0.9 0.0 0.1 0.8
2 -1.0 -0.1 0.1 0.0 1.0
3 1.0 0.0 0.6 -1.0 0.0









share|improve this question
















I am working on a dataset with missing values. The head of the dataset looks like this:



+1 1:0.2 2:0.7 3:-1.2 4:0.5
-1 1:0.9 3:0.1 4:0.8
-1 1:-0.1 2:0.1 4:1.0
+1 2:0.6 3:-1.0


The first column is the label of the data, and the number in front of the colon is the index of the feature. Some features are missing at some rows. So when I import the data using the following code,



df = pandas.read_csv('dataset',header=None,sep = 's+|:',engine='python',dtype=float)


I get a dataframe looks like



    0       1       2       3       4       5       6       7       8
0 1.0 1.0 0.2 2.0 0.7 3.0 -1.2 4.0 0.5
1 -1.0 1.0 0.9 3.0 0.1 4.0 0.8 NaN NaN
2 -1.0 1.0 -0.1 2.0 0.1 4.0 1.0 NaN NaN
3 1.0 2.0 0.6 3.0 -1.0 NaN NaN NaN NaN


I want to replace the NaNs with 0s in the correct place. But if I use df.fillna(0), I will replace the NaN at the end of each row, which looks like



    0       1       2       3       4       5       6       7       8
0 1.0 1.0 0.2 2.0 0.7 3.0 -1.2 4.0 0.5
1 -1.0 1.0 0.9 3.0 0.1 4.0 0.8 0.0 0.0
2 -1.0 1.0 -0.1 2.0 0.1 4.0 1.0 0.0 0.0
3 1.0 2.0 0.6 3.0 -1.0 0.0 0.0 0.0 0.0


What I really want is a dataframe looks like this,



    0       1       2       3       4       5       6       7       8
0 1.0 1.0 0.2 2.0 0.7 3.0 -1.2 4.0 0.5
1 -1.0 1.0 0.9 0.0 0.0 3.0 0.1 4.0 0.8
2 -1.0 1.0 -0.1 2.0 0.1 0.0 0.0 4.0 1.0
3 1.0 0.0 0.0 2.0 0.6 3.0 -1.0 0.0 0.0


So after I drop the index I should have



    0       1       2       3       4     
0 1.0 0.2 0.7 -1.2 0.5
1 -1.0 0.9 0.0 0.1 0.8
2 -1.0 -0.1 0.1 0.0 1.0
3 1.0 0.0 0.6 -1.0 0.0






python pandas






share|improve this question















share|improve this question













share|improve this question




share|improve this question








edited Nov 15 '18 at 17:59







Neyo Yang

















asked Nov 15 '18 at 17:49









Neyo YangNeyo Yang

615




615








  • 3





    Your question is confusing. You say you want to replace the NaNs with 0, but you say that fillna(0) replaces the NaNs with 0, and you don't want that. Are you instead looking for dropna(axis=1)?

    – G. Anderson
    Nov 15 '18 at 17:52








  • 1





    Can you double check your df you posted under "What I really want is a dataframe to that looks like this"? Not sure how you went from 9 -> 5 columns

    – Capn Jack
    Nov 15 '18 at 17:52








  • 1





    @CapnJack, also different values in some of the columns

    – G. Anderson
    Nov 15 '18 at 17:53








  • 1





    @BrianJoseph, that sounds like dropna() with extra steps. Looking at he values, it seems like OP wants to shift values from the ends of the rows into earlier columns...flagged for being unclear

    – G. Anderson
    Nov 15 '18 at 17:57






  • 1





    I think in each row of input the number in front of the : is supposed to be the correct column for the value after it, so pandas.read_csv is probably the problem here.

    – BurningKarl
    Nov 15 '18 at 18:09














  • 3





    Your question is confusing. You say you want to replace the NaNs with 0, but you say that fillna(0) replaces the NaNs with 0, and you don't want that. Are you instead looking for dropna(axis=1)?

    – G. Anderson
    Nov 15 '18 at 17:52








  • 1





    Can you double check your df you posted under "What I really want is a dataframe to that looks like this"? Not sure how you went from 9 -> 5 columns

    – Capn Jack
    Nov 15 '18 at 17:52








  • 1





    @CapnJack, also different values in some of the columns

    – G. Anderson
    Nov 15 '18 at 17:53








  • 1





    @BrianJoseph, that sounds like dropna() with extra steps. Looking at he values, it seems like OP wants to shift values from the ends of the rows into earlier columns...flagged for being unclear

    – G. Anderson
    Nov 15 '18 at 17:57






  • 1





    I think in each row of input the number in front of the : is supposed to be the correct column for the value after it, so pandas.read_csv is probably the problem here.

    – BurningKarl
    Nov 15 '18 at 18:09








3




3





Your question is confusing. You say you want to replace the NaNs with 0, but you say that fillna(0) replaces the NaNs with 0, and you don't want that. Are you instead looking for dropna(axis=1)?

– G. Anderson
Nov 15 '18 at 17:52







Your question is confusing. You say you want to replace the NaNs with 0, but you say that fillna(0) replaces the NaNs with 0, and you don't want that. Are you instead looking for dropna(axis=1)?

– G. Anderson
Nov 15 '18 at 17:52






1




1





Can you double check your df you posted under "What I really want is a dataframe to that looks like this"? Not sure how you went from 9 -> 5 columns

– Capn Jack
Nov 15 '18 at 17:52







Can you double check your df you posted under "What I really want is a dataframe to that looks like this"? Not sure how you went from 9 -> 5 columns

– Capn Jack
Nov 15 '18 at 17:52






1




1





@CapnJack, also different values in some of the columns

– G. Anderson
Nov 15 '18 at 17:53







@CapnJack, also different values in some of the columns

– G. Anderson
Nov 15 '18 at 17:53






1




1





@BrianJoseph, that sounds like dropna() with extra steps. Looking at he values, it seems like OP wants to shift values from the ends of the rows into earlier columns...flagged for being unclear

– G. Anderson
Nov 15 '18 at 17:57





@BrianJoseph, that sounds like dropna() with extra steps. Looking at he values, it seems like OP wants to shift values from the ends of the rows into earlier columns...flagged for being unclear

– G. Anderson
Nov 15 '18 at 17:57




1




1





I think in each row of input the number in front of the : is supposed to be the correct column for the value after it, so pandas.read_csv is probably the problem here.

– BurningKarl
Nov 15 '18 at 18:09





I think in each row of input the number in front of the : is supposed to be the correct column for the value after it, so pandas.read_csv is probably the problem here.

– BurningKarl
Nov 15 '18 at 18:09












1 Answer
1






active

oldest

votes


















1














The problem isn't with filling N/A values, as @BurningKarl suggested in the comments, the problem is trying to read in file with read_csv that isn't in any way a csv or csv-like file. You will likely need to parse this file differently.



If it helps you get started, I have posted a snippet below that shows how to get the data formatted to ingest into a proper dataframe, according to what you say you need. If you can parse your file with file.readlines into a list of dictionaries, you can just wrap that in a DataFrame constructor. (Note, this parsing will likely take some effort to get it exactly right)



x=[{0:1,1:0.2, 2:0.7, 3:-1.2, 4:0.5},
{0:-1,1:0.9, 3:0.1, 4:0.8},
{0:-1,1:-0.1, 2:0.1, 4:1.0},
{0:1,2:0.6, 3:-1.0}]

pd.DataFrame(x)


gives you



    0    1       2      3       4
0 1 0.2 0.7 -1.2 0.5
1 -1 0.9 NaN 0.1 0.8
2 -1 -0.1 0.1 NaN 1.0
3 1 NaN 0.6 -1.0 NaN


and then you can just fillna(0) as you tried before






share|improve this answer


























  • I used csv.reader instead of readlines and followed your suggestion, and it works.

    – Neyo Yang
    Nov 15 '18 at 20:46











  • I'm glad I was able to help. Don't forget to accept the answer if you feel like it's warranted.

    – G. Anderson
    Nov 15 '18 at 21:37











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1 Answer
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1 Answer
1






active

oldest

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active

oldest

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active

oldest

votes









1














The problem isn't with filling N/A values, as @BurningKarl suggested in the comments, the problem is trying to read in file with read_csv that isn't in any way a csv or csv-like file. You will likely need to parse this file differently.



If it helps you get started, I have posted a snippet below that shows how to get the data formatted to ingest into a proper dataframe, according to what you say you need. If you can parse your file with file.readlines into a list of dictionaries, you can just wrap that in a DataFrame constructor. (Note, this parsing will likely take some effort to get it exactly right)



x=[{0:1,1:0.2, 2:0.7, 3:-1.2, 4:0.5},
{0:-1,1:0.9, 3:0.1, 4:0.8},
{0:-1,1:-0.1, 2:0.1, 4:1.0},
{0:1,2:0.6, 3:-1.0}]

pd.DataFrame(x)


gives you



    0    1       2      3       4
0 1 0.2 0.7 -1.2 0.5
1 -1 0.9 NaN 0.1 0.8
2 -1 -0.1 0.1 NaN 1.0
3 1 NaN 0.6 -1.0 NaN


and then you can just fillna(0) as you tried before






share|improve this answer


























  • I used csv.reader instead of readlines and followed your suggestion, and it works.

    – Neyo Yang
    Nov 15 '18 at 20:46











  • I'm glad I was able to help. Don't forget to accept the answer if you feel like it's warranted.

    – G. Anderson
    Nov 15 '18 at 21:37
















1














The problem isn't with filling N/A values, as @BurningKarl suggested in the comments, the problem is trying to read in file with read_csv that isn't in any way a csv or csv-like file. You will likely need to parse this file differently.



If it helps you get started, I have posted a snippet below that shows how to get the data formatted to ingest into a proper dataframe, according to what you say you need. If you can parse your file with file.readlines into a list of dictionaries, you can just wrap that in a DataFrame constructor. (Note, this parsing will likely take some effort to get it exactly right)



x=[{0:1,1:0.2, 2:0.7, 3:-1.2, 4:0.5},
{0:-1,1:0.9, 3:0.1, 4:0.8},
{0:-1,1:-0.1, 2:0.1, 4:1.0},
{0:1,2:0.6, 3:-1.0}]

pd.DataFrame(x)


gives you



    0    1       2      3       4
0 1 0.2 0.7 -1.2 0.5
1 -1 0.9 NaN 0.1 0.8
2 -1 -0.1 0.1 NaN 1.0
3 1 NaN 0.6 -1.0 NaN


and then you can just fillna(0) as you tried before






share|improve this answer


























  • I used csv.reader instead of readlines and followed your suggestion, and it works.

    – Neyo Yang
    Nov 15 '18 at 20:46











  • I'm glad I was able to help. Don't forget to accept the answer if you feel like it's warranted.

    – G. Anderson
    Nov 15 '18 at 21:37














1












1








1







The problem isn't with filling N/A values, as @BurningKarl suggested in the comments, the problem is trying to read in file with read_csv that isn't in any way a csv or csv-like file. You will likely need to parse this file differently.



If it helps you get started, I have posted a snippet below that shows how to get the data formatted to ingest into a proper dataframe, according to what you say you need. If you can parse your file with file.readlines into a list of dictionaries, you can just wrap that in a DataFrame constructor. (Note, this parsing will likely take some effort to get it exactly right)



x=[{0:1,1:0.2, 2:0.7, 3:-1.2, 4:0.5},
{0:-1,1:0.9, 3:0.1, 4:0.8},
{0:-1,1:-0.1, 2:0.1, 4:1.0},
{0:1,2:0.6, 3:-1.0}]

pd.DataFrame(x)


gives you



    0    1       2      3       4
0 1 0.2 0.7 -1.2 0.5
1 -1 0.9 NaN 0.1 0.8
2 -1 -0.1 0.1 NaN 1.0
3 1 NaN 0.6 -1.0 NaN


and then you can just fillna(0) as you tried before






share|improve this answer















The problem isn't with filling N/A values, as @BurningKarl suggested in the comments, the problem is trying to read in file with read_csv that isn't in any way a csv or csv-like file. You will likely need to parse this file differently.



If it helps you get started, I have posted a snippet below that shows how to get the data formatted to ingest into a proper dataframe, according to what you say you need. If you can parse your file with file.readlines into a list of dictionaries, you can just wrap that in a DataFrame constructor. (Note, this parsing will likely take some effort to get it exactly right)



x=[{0:1,1:0.2, 2:0.7, 3:-1.2, 4:0.5},
{0:-1,1:0.9, 3:0.1, 4:0.8},
{0:-1,1:-0.1, 2:0.1, 4:1.0},
{0:1,2:0.6, 3:-1.0}]

pd.DataFrame(x)


gives you



    0    1       2      3       4
0 1 0.2 0.7 -1.2 0.5
1 -1 0.9 NaN 0.1 0.8
2 -1 -0.1 0.1 NaN 1.0
3 1 NaN 0.6 -1.0 NaN


and then you can just fillna(0) as you tried before







share|improve this answer














share|improve this answer



share|improve this answer








edited Nov 15 '18 at 19:14

























answered Nov 15 '18 at 19:08









G. AndersonG. Anderson

1,6941311




1,6941311













  • I used csv.reader instead of readlines and followed your suggestion, and it works.

    – Neyo Yang
    Nov 15 '18 at 20:46











  • I'm glad I was able to help. Don't forget to accept the answer if you feel like it's warranted.

    – G. Anderson
    Nov 15 '18 at 21:37



















  • I used csv.reader instead of readlines and followed your suggestion, and it works.

    – Neyo Yang
    Nov 15 '18 at 20:46











  • I'm glad I was able to help. Don't forget to accept the answer if you feel like it's warranted.

    – G. Anderson
    Nov 15 '18 at 21:37

















I used csv.reader instead of readlines and followed your suggestion, and it works.

– Neyo Yang
Nov 15 '18 at 20:46





I used csv.reader instead of readlines and followed your suggestion, and it works.

– Neyo Yang
Nov 15 '18 at 20:46













I'm glad I was able to help. Don't forget to accept the answer if you feel like it's warranted.

– G. Anderson
Nov 15 '18 at 21:37





I'm glad I was able to help. Don't forget to accept the answer if you feel like it's warranted.

– G. Anderson
Nov 15 '18 at 21:37




















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