TensorVariable to Array
I'm trying to evaluate a theano TensorValue expression:
import pymc3
import numpy as np
with pymc3.Model():
growth = pymc3.Normal('growth_%s' % 'some_name', 0, 10)
x = np.arange(4)
(x * growth).eval()
but get the error
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/gof/graph.py", line 522, in eval
self._fn_cache[inputs] = theano.function(inputs, self)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/compile/function.py", line 317, in function
output_keys=output_keys)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/compile/pfunc.py", line 486, in pfunc
output_keys=output_keys)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/compile/function_module.py", line 1839, in orig_function
name=name)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/compile/function_module.py", line 1487, in __init__
accept_inplace)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/compile/function_module.py", line 181, in std_fgraph
update_mapping=update_mapping)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/gof/fg.py", line 175, in __init__
self.__import_r__(output, reason="init")
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/gof/fg.py", line 346, in __import_r__
self.__import__(variable.owner, reason=reason)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/gof/fg.py", line 391, in __import__
raise MissingInputError(error_msg, variable=r)
theano.gof.fg.MissingInputError: Input 0 of the graph (indices start from 0), used to compute InplaceDimShuffle{x}(growth_some_name), was not provided and not given a value. Use the Theano flag exception_verbosity='high', for more information on this error.
I tried
Can someone please help me see what the theano variables actually output?
Thank you!
I'm using Python 2.7 and theano 1.0.3
python-2.7 theano pymc3
add a comment |
I'm trying to evaluate a theano TensorValue expression:
import pymc3
import numpy as np
with pymc3.Model():
growth = pymc3.Normal('growth_%s' % 'some_name', 0, 10)
x = np.arange(4)
(x * growth).eval()
but get the error
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/gof/graph.py", line 522, in eval
self._fn_cache[inputs] = theano.function(inputs, self)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/compile/function.py", line 317, in function
output_keys=output_keys)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/compile/pfunc.py", line 486, in pfunc
output_keys=output_keys)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/compile/function_module.py", line 1839, in orig_function
name=name)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/compile/function_module.py", line 1487, in __init__
accept_inplace)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/compile/function_module.py", line 181, in std_fgraph
update_mapping=update_mapping)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/gof/fg.py", line 175, in __init__
self.__import_r__(output, reason="init")
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/gof/fg.py", line 346, in __import_r__
self.__import__(variable.owner, reason=reason)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/gof/fg.py", line 391, in __import__
raise MissingInputError(error_msg, variable=r)
theano.gof.fg.MissingInputError: Input 0 of the graph (indices start from 0), used to compute InplaceDimShuffle{x}(growth_some_name), was not provided and not given a value. Use the Theano flag exception_verbosity='high', for more information on this error.
I tried
Can someone please help me see what the theano variables actually output?
Thank you!
I'm using Python 2.7 and theano 1.0.3
python-2.7 theano pymc3
Can you edit your question providing the full error message?
– Cartucho
Nov 14 '18 at 22:30
add a comment |
I'm trying to evaluate a theano TensorValue expression:
import pymc3
import numpy as np
with pymc3.Model():
growth = pymc3.Normal('growth_%s' % 'some_name', 0, 10)
x = np.arange(4)
(x * growth).eval()
but get the error
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/gof/graph.py", line 522, in eval
self._fn_cache[inputs] = theano.function(inputs, self)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/compile/function.py", line 317, in function
output_keys=output_keys)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/compile/pfunc.py", line 486, in pfunc
output_keys=output_keys)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/compile/function_module.py", line 1839, in orig_function
name=name)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/compile/function_module.py", line 1487, in __init__
accept_inplace)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/compile/function_module.py", line 181, in std_fgraph
update_mapping=update_mapping)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/gof/fg.py", line 175, in __init__
self.__import_r__(output, reason="init")
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/gof/fg.py", line 346, in __import_r__
self.__import__(variable.owner, reason=reason)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/gof/fg.py", line 391, in __import__
raise MissingInputError(error_msg, variable=r)
theano.gof.fg.MissingInputError: Input 0 of the graph (indices start from 0), used to compute InplaceDimShuffle{x}(growth_some_name), was not provided and not given a value. Use the Theano flag exception_verbosity='high', for more information on this error.
I tried
Can someone please help me see what the theano variables actually output?
Thank you!
I'm using Python 2.7 and theano 1.0.3
python-2.7 theano pymc3
I'm trying to evaluate a theano TensorValue expression:
import pymc3
import numpy as np
with pymc3.Model():
growth = pymc3.Normal('growth_%s' % 'some_name', 0, 10)
x = np.arange(4)
(x * growth).eval()
but get the error
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/gof/graph.py", line 522, in eval
self._fn_cache[inputs] = theano.function(inputs, self)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/compile/function.py", line 317, in function
output_keys=output_keys)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/compile/pfunc.py", line 486, in pfunc
output_keys=output_keys)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/compile/function_module.py", line 1839, in orig_function
name=name)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/compile/function_module.py", line 1487, in __init__
accept_inplace)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/compile/function_module.py", line 181, in std_fgraph
update_mapping=update_mapping)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/gof/fg.py", line 175, in __init__
self.__import_r__(output, reason="init")
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/gof/fg.py", line 346, in __import_r__
self.__import__(variable.owner, reason=reason)
File "/home/danna/.virtualenvs/lib/python2.7/site-packages/theano/gof/fg.py", line 391, in __import__
raise MissingInputError(error_msg, variable=r)
theano.gof.fg.MissingInputError: Input 0 of the graph (indices start from 0), used to compute InplaceDimShuffle{x}(growth_some_name), was not provided and not given a value. Use the Theano flag exception_verbosity='high', for more information on this error.
I tried
Can someone please help me see what the theano variables actually output?
Thank you!
I'm using Python 2.7 and theano 1.0.3
python-2.7 theano pymc3
python-2.7 theano pymc3
edited Nov 15 '18 at 14:24
Danna
asked Nov 14 '18 at 21:05
DannaDanna
133
133
Can you edit your question providing the full error message?
– Cartucho
Nov 14 '18 at 22:30
add a comment |
Can you edit your question providing the full error message?
– Cartucho
Nov 14 '18 at 22:30
Can you edit your question providing the full error message?
– Cartucho
Nov 14 '18 at 22:30
Can you edit your question providing the full error message?
– Cartucho
Nov 14 '18 at 22:30
add a comment |
1 Answer
1
active
oldest
votes
While PyMC3 distributions are TensorVariable
objects, they don't technical have any values to be evaluated outside of sampling. If you want values, you have to at least run sampling on the model:
with pymc3.Model():
growth = pymc3.Normal('growth', 0, 10)
trace = pymc3.sample(10)
x = np.arange(4)
x[:, np.newaxis]*trace['growth']
If you want to view node values during sampling, you'd need to use theano.tensor.printing.Print
objects. For more info, see the PyMC3 debugging tips.
add a comment |
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1 Answer
1
active
oldest
votes
1 Answer
1
active
oldest
votes
active
oldest
votes
active
oldest
votes
While PyMC3 distributions are TensorVariable
objects, they don't technical have any values to be evaluated outside of sampling. If you want values, you have to at least run sampling on the model:
with pymc3.Model():
growth = pymc3.Normal('growth', 0, 10)
trace = pymc3.sample(10)
x = np.arange(4)
x[:, np.newaxis]*trace['growth']
If you want to view node values during sampling, you'd need to use theano.tensor.printing.Print
objects. For more info, see the PyMC3 debugging tips.
add a comment |
While PyMC3 distributions are TensorVariable
objects, they don't technical have any values to be evaluated outside of sampling. If you want values, you have to at least run sampling on the model:
with pymc3.Model():
growth = pymc3.Normal('growth', 0, 10)
trace = pymc3.sample(10)
x = np.arange(4)
x[:, np.newaxis]*trace['growth']
If you want to view node values during sampling, you'd need to use theano.tensor.printing.Print
objects. For more info, see the PyMC3 debugging tips.
add a comment |
While PyMC3 distributions are TensorVariable
objects, they don't technical have any values to be evaluated outside of sampling. If you want values, you have to at least run sampling on the model:
with pymc3.Model():
growth = pymc3.Normal('growth', 0, 10)
trace = pymc3.sample(10)
x = np.arange(4)
x[:, np.newaxis]*trace['growth']
If you want to view node values during sampling, you'd need to use theano.tensor.printing.Print
objects. For more info, see the PyMC3 debugging tips.
While PyMC3 distributions are TensorVariable
objects, they don't technical have any values to be evaluated outside of sampling. If you want values, you have to at least run sampling on the model:
with pymc3.Model():
growth = pymc3.Normal('growth', 0, 10)
trace = pymc3.sample(10)
x = np.arange(4)
x[:, np.newaxis]*trace['growth']
If you want to view node values during sampling, you'd need to use theano.tensor.printing.Print
objects. For more info, see the PyMC3 debugging tips.
edited Nov 15 '18 at 17:37
answered Nov 15 '18 at 17:19
mervmerv
25.3k674109
25.3k674109
add a comment |
add a comment |
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Can you edit your question providing the full error message?
– Cartucho
Nov 14 '18 at 22:30