Calling Gurobi in Matlab from bash file
I would like your help to understand why I get the following error when calling a Matlab script using Gurobi from a bash file in the HPC of my university. I guess I'm messing up with paths or licenses.
1) Version 1
I have a folder called A containing the files
f.m,main.m
plus all the Gurobi files
gurobi.mexmaci64
gurobi_iis.m
gurobi_iis.mexmaci64
gurobi.read.m
gurobi_read.mexmaci64
gurobi_setup.m
gurobi_write.m
gurobi_write.mexmaci64
The chain is: main.m calls f.m which uses Gurobi to run an LP. When I run main.m in Matlab interactively in my laptop it works perfectly.
This is my bash file
#$ -S /bin/bash
#$ -l h_vmem=8G
#$ -l tmem=8G
#$ -l h_rt=480:0:0
#$ -cwd
#$ -j y
#Run 1 tasks where each task has a different $SGE_TASK_ID ranging from 1 to 1
#$ -t 1-1
#$ -N out6M
date
hostname
#Output the Task ID
echo "Task ID is $SGE_TASK_ID"
export GRB_LICENSE_FILE="/share/apps/[...].lic"
export PATH=/share/apps/[...]/matlab:/share/apps/matlabR2017b/bin:$PATH
matlab -nodisplay -nodesktop -nojvm -nosplash -r "main; ID = $SGE_TASK_ID; f; exit"
When I run this after having cd in my folder I get as error
Attempt to execute SCRIPT gurobi as a function: [...]
2) Version 2
I then thought that maybe the HPC does not like that I have the following files
gurobi.mexmaci64
gurobi_iis.m
gurobi_iis.mexmaci64
gurobi.read.m
gurobi_read.mexmaci64
gurobi_setup.m
gurobi_write.m
gurobi_write.mexmaci64
in my folder (maybe they are already exported from the path I have indicated in the bash file to my folder?). Hence I have removed them.
The folder A contains now just the files
f.m,main.m
The bash file is the same as in Version 1.
When I run this after having cd into my folder I get as error
Error using gurobi
Gurobi error 10009: HostID mismatch (licensed to [...], hostid is [...])
What is likely to be the mistake?
bash matlab gurobi
asked Nov 14 '18 at 20:54
user3285148user3285148
631526
add a comment |
I would like your help to understand why I get the following error when calling a Matlab script using Gurobi from a bash file in the HPC of my university. I guess I'm messing up with paths or licenses.
1) Version 1
I have a folder called A containing the files
f.m,main.m
plus all the Gurobi files
gurobi.mexmaci64
gurobi_iis.m
gurobi_iis.mexmaci64
gurobi.read.m
gurobi_read.mexmaci64
gurobi_setup.m
gurobi_write.m
gurobi_write.mexmaci64
The chain is: main.m calls f.m which uses Gurobi to run an LP. When I run main.m in Matlab interactively in my laptop it works perfectly.
This is my bash file
#$ -S /bin/bash
#$ -l h_vmem=8G
#$ -l tmem=8G
#$ -l h_rt=480:0:0
#$ -cwd
#$ -j y
#Run 1 tasks where each task has a different $SGE_TASK_ID ranging from 1 to 1
#$ -t 1-1
#$ -N out6M
date
hostname
#Output the Task ID
echo "Task ID is $SGE_TASK_ID"
export GRB_LICENSE_FILE="/share/apps/[...].lic"
export PATH=/share/apps/[...]/matlab:/share/apps/matlabR2017b/bin:$PATH
matlab -nodisplay -nodesktop -nojvm -nosplash -r "main; ID = $SGE_TASK_ID; f; exit"
When I run this after having cd in my folder I get as error
Attempt to execute SCRIPT gurobi as a function: [...]
2) Version 2
I then thought that maybe the HPC does not like that I have the following files
gurobi.mexmaci64
gurobi_iis.m
gurobi_iis.mexmaci64
gurobi.read.m
gurobi_read.mexmaci64
gurobi_setup.m
gurobi_write.m
gurobi_write.mexmaci64
in my folder (maybe they are already exported from the path I have indicated in the bash file to my folder?). Hence I have removed them.
The folder A contains now just the files
f.m,main.m
The bash file is the same as in Version 1.
When I run this after having cd into my folder I get as error
Error using gurobi
Gurobi error 10009: HostID mismatch (licensed to [...], hostid is [...])
What is likely to be the mistake?
bash matlab gurobi
asked Nov 14 '18 at 20:54
user3285148user3285148
631526
add a comment |
I would like your help to understand why I get the following error when calling a Matlab script using Gurobi from a bash file in the HPC of my university. I guess I'm messing up with paths or licenses.
1) Version 1
I have a folder called A containing the files
f.m,main.m
plus all the Gurobi files
gurobi.mexmaci64
gurobi_iis.m
gurobi_iis.mexmaci64
gurobi.read.m
gurobi_read.mexmaci64
gurobi_setup.m
gurobi_write.m
gurobi_write.mexmaci64
The chain is: main.m calls f.m which uses Gurobi to run an LP. When I run main.m in Matlab interactively in my laptop it works perfectly.
This is my bash file
#$ -S /bin/bash
#$ -l h_vmem=8G
#$ -l tmem=8G
#$ -l h_rt=480:0:0
#$ -cwd
#$ -j y
#Run 1 tasks where each task has a different $SGE_TASK_ID ranging from 1 to 1
#$ -t 1-1
#$ -N out6M
date
hostname
#Output the Task ID
echo "Task ID is $SGE_TASK_ID"
export GRB_LICENSE_FILE="/share/apps/[...].lic"
export PATH=/share/apps/[...]/matlab:/share/apps/matlabR2017b/bin:$PATH
matlab -nodisplay -nodesktop -nojvm -nosplash -r "main; ID = $SGE_TASK_ID; f; exit"
When I run this after having cd in my folder I get as error
Attempt to execute SCRIPT gurobi as a function: [...]
2) Version 2
I then thought that maybe the HPC does not like that I have the following files
gurobi.mexmaci64
gurobi_iis.m
gurobi_iis.mexmaci64
gurobi.read.m
gurobi_read.mexmaci64
gurobi_setup.m
gurobi_write.m
gurobi_write.mexmaci64
in my folder (maybe they are already exported from the path I have indicated in the bash file to my folder?). Hence I have removed them.
The folder A contains now just the files
f.m,main.m
The bash file is the same as in Version 1.
When I run this after having cd into my folder I get as error
Error using gurobi
Gurobi error 10009: HostID mismatch (licensed to [...], hostid is [...])
What is likely to be the mistake?
bash matlab gurobi
asked Nov 14 '18 at 20:54
user3285148user3285148
631526
I would like your help to understand why I get the following error when calling a Matlab script using Gurobi from a bash file in the HPC of my university. I guess I'm messing up with paths or licenses.
1) Version 1
I have a folder called A containing the files
f.m,main.m
plus all the Gurobi files
gurobi.mexmaci64
gurobi_iis.m
gurobi_iis.mexmaci64
gurobi.read.m
gurobi_read.mexmaci64
gurobi_setup.m
gurobi_write.m
gurobi_write.mexmaci64
The chain is: main.m calls f.m which uses Gurobi to run an LP. When I run main.m in Matlab interactively in my laptop it works perfectly.
This is my bash file
#$ -S /bin/bash
#$ -l h_vmem=8G
#$ -l tmem=8G
#$ -l h_rt=480:0:0
#$ -cwd
#$ -j y
#Run 1 tasks where each task has a different $SGE_TASK_ID ranging from 1 to 1
#$ -t 1-1
#$ -N out6M
date
hostname
#Output the Task ID
echo "Task ID is $SGE_TASK_ID"
export GRB_LICENSE_FILE="/share/apps/[...].lic"
export PATH=/share/apps/[...]/matlab:/share/apps/matlabR2017b/bin:$PATH
matlab -nodisplay -nodesktop -nojvm -nosplash -r "main; ID = $SGE_TASK_ID; f; exit"
When I run this after having cd in my folder I get as error
Attempt to execute SCRIPT gurobi as a function: [...]
2) Version 2
I then thought that maybe the HPC does not like that I have the following files
gurobi.mexmaci64
gurobi_iis.m
gurobi_iis.mexmaci64
gurobi.read.m
gurobi_read.mexmaci64
gurobi_setup.m
gurobi_write.m
gurobi_write.mexmaci64
in my folder (maybe they are already exported from the path I have indicated in the bash file to my folder?). Hence I have removed them.
The folder A contains now just the files
f.m,main.m
The bash file is the same as in Version 1.
When I run this after having cd into my folder I get as error
Error using gurobi
Gurobi error 10009: HostID mismatch (licensed to [...], hostid is [...])
What is likely to be the mistake?
bash matlab gurobi
bash matlab gurobi
asked Nov 14 '18 at 20:54
user3285148user3285148
631526
asked Nov 14 '18 at 20:54
user3285148user3285148
631526
asked Nov 14 '18 at 20:54
user3285148user3285148
631526
asked Nov 14 '18 at 20:54
user3285148user3285148
631526
asked Nov 14 '18 at 20:54
user3285148user3285148
631526
631526
add a comment |
add a comment |
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