While loop breaks after the first iteration











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This is my script which breaks on while loop after the first iteration



while IFS='' read -r line
do
cd /root/clair-container-scan
image_name=$(echo $line|cut -d '/' -f2|cut -d ':' -f1)
sh clair-container-scan.sh $line >> /root/clair-container-scan/$image_name.log
done < "$1"


The $1 refers to the file which has the below inputs to it.



kardasz/mysql:latest
visualops/httpd:latest


Most of them refer this to the STDOUT problem, so have already tried changing the >> redirection to ">" , "&>" , "&>>" but still didn't work.



The command that redirects the output to .log file will run for more than a minute. Sometimes it will not even run the first iteration and will simply give an empty output.



Can someone please help me understand what is wrong in the script?










share|improve this question
























  • we would need to see an Minimal, Complete, and Verifiable example version of your clair-container-scan.sh, it's quite possible something is wrong and causing an exit there. Good luck.
    – shellter
    Oct 11 at 14:47












  • I would also recommend doing some debugging on your own. First run your code (all of it) thru shellcheck.net . Then if those fixes don't resolve your problem, add echo "line=$line" and echo "image_name=$image_name" in appropriate places to see what is happening. If that doesn't highlight where the problem is, then add set -x before the while loop and set +x have the while loop. You may need to add the same inside of your clair-container-scan.sh. Good luck.
    – shellter
    Oct 11 at 14:50










  • Will you while loop work as expected when you replace sh clair-container-scan.sh $line with echo "line=${line}."
    – Walter A
    Oct 11 at 22:03










  • Consider redirecting the standard input of clair-container-scan.sh from /dev/null. If it reads standard input, then your main loop won't get a chance. You could also consider reading from a file descriptor other than standard input with the read -u N command.
    – Jonathan Leffler
    Oct 12 at 3:12















up vote
0
down vote

favorite












This is my script which breaks on while loop after the first iteration



while IFS='' read -r line
do
cd /root/clair-container-scan
image_name=$(echo $line|cut -d '/' -f2|cut -d ':' -f1)
sh clair-container-scan.sh $line >> /root/clair-container-scan/$image_name.log
done < "$1"


The $1 refers to the file which has the below inputs to it.



kardasz/mysql:latest
visualops/httpd:latest


Most of them refer this to the STDOUT problem, so have already tried changing the >> redirection to ">" , "&>" , "&>>" but still didn't work.



The command that redirects the output to .log file will run for more than a minute. Sometimes it will not even run the first iteration and will simply give an empty output.



Can someone please help me understand what is wrong in the script?










share|improve this question
























  • we would need to see an Minimal, Complete, and Verifiable example version of your clair-container-scan.sh, it's quite possible something is wrong and causing an exit there. Good luck.
    – shellter
    Oct 11 at 14:47












  • I would also recommend doing some debugging on your own. First run your code (all of it) thru shellcheck.net . Then if those fixes don't resolve your problem, add echo "line=$line" and echo "image_name=$image_name" in appropriate places to see what is happening. If that doesn't highlight where the problem is, then add set -x before the while loop and set +x have the while loop. You may need to add the same inside of your clair-container-scan.sh. Good luck.
    – shellter
    Oct 11 at 14:50










  • Will you while loop work as expected when you replace sh clair-container-scan.sh $line with echo "line=${line}."
    – Walter A
    Oct 11 at 22:03










  • Consider redirecting the standard input of clair-container-scan.sh from /dev/null. If it reads standard input, then your main loop won't get a chance. You could also consider reading from a file descriptor other than standard input with the read -u N command.
    – Jonathan Leffler
    Oct 12 at 3:12













up vote
0
down vote

favorite









up vote
0
down vote

favorite











This is my script which breaks on while loop after the first iteration



while IFS='' read -r line
do
cd /root/clair-container-scan
image_name=$(echo $line|cut -d '/' -f2|cut -d ':' -f1)
sh clair-container-scan.sh $line >> /root/clair-container-scan/$image_name.log
done < "$1"


The $1 refers to the file which has the below inputs to it.



kardasz/mysql:latest
visualops/httpd:latest


Most of them refer this to the STDOUT problem, so have already tried changing the >> redirection to ">" , "&>" , "&>>" but still didn't work.



The command that redirects the output to .log file will run for more than a minute. Sometimes it will not even run the first iteration and will simply give an empty output.



Can someone please help me understand what is wrong in the script?










share|improve this question















This is my script which breaks on while loop after the first iteration



while IFS='' read -r line
do
cd /root/clair-container-scan
image_name=$(echo $line|cut -d '/' -f2|cut -d ':' -f1)
sh clair-container-scan.sh $line >> /root/clair-container-scan/$image_name.log
done < "$1"


The $1 refers to the file which has the below inputs to it.



kardasz/mysql:latest
visualops/httpd:latest


Most of them refer this to the STDOUT problem, so have already tried changing the >> redirection to ">" , "&>" , "&>>" but still didn't work.



The command that redirects the output to .log file will run for more than a minute. Sometimes it will not even run the first iteration and will simply give an empty output.



Can someone please help me understand what is wrong in the script?







shell while-loop stdout






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edited Nov 12 at 5:35









u__

2,572929




2,572929










asked Oct 11 at 12:05









Nishanth

85




85












  • we would need to see an Minimal, Complete, and Verifiable example version of your clair-container-scan.sh, it's quite possible something is wrong and causing an exit there. Good luck.
    – shellter
    Oct 11 at 14:47












  • I would also recommend doing some debugging on your own. First run your code (all of it) thru shellcheck.net . Then if those fixes don't resolve your problem, add echo "line=$line" and echo "image_name=$image_name" in appropriate places to see what is happening. If that doesn't highlight where the problem is, then add set -x before the while loop and set +x have the while loop. You may need to add the same inside of your clair-container-scan.sh. Good luck.
    – shellter
    Oct 11 at 14:50










  • Will you while loop work as expected when you replace sh clair-container-scan.sh $line with echo "line=${line}."
    – Walter A
    Oct 11 at 22:03










  • Consider redirecting the standard input of clair-container-scan.sh from /dev/null. If it reads standard input, then your main loop won't get a chance. You could also consider reading from a file descriptor other than standard input with the read -u N command.
    – Jonathan Leffler
    Oct 12 at 3:12


















  • we would need to see an Minimal, Complete, and Verifiable example version of your clair-container-scan.sh, it's quite possible something is wrong and causing an exit there. Good luck.
    – shellter
    Oct 11 at 14:47












  • I would also recommend doing some debugging on your own. First run your code (all of it) thru shellcheck.net . Then if those fixes don't resolve your problem, add echo "line=$line" and echo "image_name=$image_name" in appropriate places to see what is happening. If that doesn't highlight where the problem is, then add set -x before the while loop and set +x have the while loop. You may need to add the same inside of your clair-container-scan.sh. Good luck.
    – shellter
    Oct 11 at 14:50










  • Will you while loop work as expected when you replace sh clair-container-scan.sh $line with echo "line=${line}."
    – Walter A
    Oct 11 at 22:03










  • Consider redirecting the standard input of clair-container-scan.sh from /dev/null. If it reads standard input, then your main loop won't get a chance. You could also consider reading from a file descriptor other than standard input with the read -u N command.
    – Jonathan Leffler
    Oct 12 at 3:12
















we would need to see an Minimal, Complete, and Verifiable example version of your clair-container-scan.sh, it's quite possible something is wrong and causing an exit there. Good luck.
– shellter
Oct 11 at 14:47






we would need to see an Minimal, Complete, and Verifiable example version of your clair-container-scan.sh, it's quite possible something is wrong and causing an exit there. Good luck.
– shellter
Oct 11 at 14:47














I would also recommend doing some debugging on your own. First run your code (all of it) thru shellcheck.net . Then if those fixes don't resolve your problem, add echo "line=$line" and echo "image_name=$image_name" in appropriate places to see what is happening. If that doesn't highlight where the problem is, then add set -x before the while loop and set +x have the while loop. You may need to add the same inside of your clair-container-scan.sh. Good luck.
– shellter
Oct 11 at 14:50




I would also recommend doing some debugging on your own. First run your code (all of it) thru shellcheck.net . Then if those fixes don't resolve your problem, add echo "line=$line" and echo "image_name=$image_name" in appropriate places to see what is happening. If that doesn't highlight where the problem is, then add set -x before the while loop and set +x have the while loop. You may need to add the same inside of your clair-container-scan.sh. Good luck.
– shellter
Oct 11 at 14:50












Will you while loop work as expected when you replace sh clair-container-scan.sh $line with echo "line=${line}."
– Walter A
Oct 11 at 22:03




Will you while loop work as expected when you replace sh clair-container-scan.sh $line with echo "line=${line}."
– Walter A
Oct 11 at 22:03












Consider redirecting the standard input of clair-container-scan.sh from /dev/null. If it reads standard input, then your main loop won't get a chance. You could also consider reading from a file descriptor other than standard input with the read -u N command.
– Jonathan Leffler
Oct 12 at 3:12




Consider redirecting the standard input of clair-container-scan.sh from /dev/null. If it reads standard input, then your main loop won't get a chance. You could also consider reading from a file descriptor other than standard input with the read -u N command.
– Jonathan Leffler
Oct 12 at 3:12












1 Answer
1






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up vote
0
down vote



accepted










Resolved the issue by using for loop and read array. The problem is actually with lines the while loop read, it has special characters like "/ :"



filename=$1
readarray images < "$filename"
for line in "${images[@]}"
do
echo ""
done





share|improve this answer





















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    1 Answer
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    1 Answer
    1






    active

    oldest

    votes









    active

    oldest

    votes






    active

    oldest

    votes








    up vote
    0
    down vote



    accepted










    Resolved the issue by using for loop and read array. The problem is actually with lines the while loop read, it has special characters like "/ :"



    filename=$1
    readarray images < "$filename"
    for line in "${images[@]}"
    do
    echo ""
    done





    share|improve this answer

























      up vote
      0
      down vote



      accepted










      Resolved the issue by using for loop and read array. The problem is actually with lines the while loop read, it has special characters like "/ :"



      filename=$1
      readarray images < "$filename"
      for line in "${images[@]}"
      do
      echo ""
      done





      share|improve this answer























        up vote
        0
        down vote



        accepted







        up vote
        0
        down vote



        accepted






        Resolved the issue by using for loop and read array. The problem is actually with lines the while loop read, it has special characters like "/ :"



        filename=$1
        readarray images < "$filename"
        for line in "${images[@]}"
        do
        echo ""
        done





        share|improve this answer












        Resolved the issue by using for loop and read array. The problem is actually with lines the while loop read, it has special characters like "/ :"



        filename=$1
        readarray images < "$filename"
        for line in "${images[@]}"
        do
        echo ""
        done






        share|improve this answer












        share|improve this answer



        share|improve this answer










        answered Nov 12 at 5:30









        Nishanth

        85




        85






























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