Numerical integration with scipy.integrate.trapz returns a result but scipy.integrate.simps does not
I am trying to integrate the following data numerically:
t,y
9.960000000000001e-05,8.334379999999999e-05
9.98e-05,0.000126125
0.0001,0.00018125
0.0001002,0.0002385
0.00010040000000000001,0.000289625
0.0001006,0.000347313
0.0001008,0.000391719
0.000101,0.00043284399999999994
0.00010120000000000001,0.000472375
0.00010140000000000001,0.000502469
0.00010160000000000002,0.000528594
0.00010180000000000001,0.000546219
0.000102,0.000569188
0.0001022,0.000584719
0.0001024,0.000593969
0.00010260000000000001,0.000607375
0.0001028,0.000618906
0.000103,0.000629344
0.0001032,0.000629344
0.0001034,0.000636313
0.00010360000000000001,0.0006374999999999999
0.0001038,0.000630375
0.00010400000000000001,0.00059875
0.0001042,0.00046825
0.0001044,0.000287344
0.00010460000000000002,0.000208594
0.0001048,0.000196094
0.000105,0.000172625
0.00010520000000000001,0.000134781
0.0001054,0.000115906
0.0001056,0.00010306300000000001
0.00010580000000000001,9.31563e-05
As shown below, I read this data set from a csv file.
This is my code:
import pandas as pd
from scipy.integrate import trapz, simps
root="my/root/dir"
df = pd.read_csv(root+r"simps.csv")
print(trapz(df["t"], df["y"]))
print(simps(df["t"], df["y"]))
trapz returns a value (-9.5865055e-10) while simps returns nan and the following error:
anacondapathscipyintegratequadrature.py:324: RuntimeWarning: divide by zero encountered in true_divide
h0divh1 = h0 / h1
anacondapathscipyintegratequadrature.py:326: RuntimeWarning: divide by zero encountered in true_divide
y[slice1]*hsum*hsum/hprod +
anacondapathscipyintegratequadrature.py:327: RuntimeWarning: invalid value encountered in add
y[slice2]*(2-h0divh1))
anacondapathscipyintegratequadrature.py:326: RuntimeWarning: invalid value encountered in add
y[slice1]*hsum*hsum/hprod +
Why does this error occur?
python math scipy integrate
add a comment |
I am trying to integrate the following data numerically:
t,y
9.960000000000001e-05,8.334379999999999e-05
9.98e-05,0.000126125
0.0001,0.00018125
0.0001002,0.0002385
0.00010040000000000001,0.000289625
0.0001006,0.000347313
0.0001008,0.000391719
0.000101,0.00043284399999999994
0.00010120000000000001,0.000472375
0.00010140000000000001,0.000502469
0.00010160000000000002,0.000528594
0.00010180000000000001,0.000546219
0.000102,0.000569188
0.0001022,0.000584719
0.0001024,0.000593969
0.00010260000000000001,0.000607375
0.0001028,0.000618906
0.000103,0.000629344
0.0001032,0.000629344
0.0001034,0.000636313
0.00010360000000000001,0.0006374999999999999
0.0001038,0.000630375
0.00010400000000000001,0.00059875
0.0001042,0.00046825
0.0001044,0.000287344
0.00010460000000000002,0.000208594
0.0001048,0.000196094
0.000105,0.000172625
0.00010520000000000001,0.000134781
0.0001054,0.000115906
0.0001056,0.00010306300000000001
0.00010580000000000001,9.31563e-05
As shown below, I read this data set from a csv file.
This is my code:
import pandas as pd
from scipy.integrate import trapz, simps
root="my/root/dir"
df = pd.read_csv(root+r"simps.csv")
print(trapz(df["t"], df["y"]))
print(simps(df["t"], df["y"]))
trapz returns a value (-9.5865055e-10) while simps returns nan and the following error:
anacondapathscipyintegratequadrature.py:324: RuntimeWarning: divide by zero encountered in true_divide
h0divh1 = h0 / h1
anacondapathscipyintegratequadrature.py:326: RuntimeWarning: divide by zero encountered in true_divide
y[slice1]*hsum*hsum/hprod +
anacondapathscipyintegratequadrature.py:327: RuntimeWarning: invalid value encountered in add
y[slice2]*(2-h0divh1))
anacondapathscipyintegratequadrature.py:326: RuntimeWarning: invalid value encountered in add
y[slice1]*hsum*hsum/hprod +
Why does this error occur?
python math scipy integrate
add a comment |
I am trying to integrate the following data numerically:
t,y
9.960000000000001e-05,8.334379999999999e-05
9.98e-05,0.000126125
0.0001,0.00018125
0.0001002,0.0002385
0.00010040000000000001,0.000289625
0.0001006,0.000347313
0.0001008,0.000391719
0.000101,0.00043284399999999994
0.00010120000000000001,0.000472375
0.00010140000000000001,0.000502469
0.00010160000000000002,0.000528594
0.00010180000000000001,0.000546219
0.000102,0.000569188
0.0001022,0.000584719
0.0001024,0.000593969
0.00010260000000000001,0.000607375
0.0001028,0.000618906
0.000103,0.000629344
0.0001032,0.000629344
0.0001034,0.000636313
0.00010360000000000001,0.0006374999999999999
0.0001038,0.000630375
0.00010400000000000001,0.00059875
0.0001042,0.00046825
0.0001044,0.000287344
0.00010460000000000002,0.000208594
0.0001048,0.000196094
0.000105,0.000172625
0.00010520000000000001,0.000134781
0.0001054,0.000115906
0.0001056,0.00010306300000000001
0.00010580000000000001,9.31563e-05
As shown below, I read this data set from a csv file.
This is my code:
import pandas as pd
from scipy.integrate import trapz, simps
root="my/root/dir"
df = pd.read_csv(root+r"simps.csv")
print(trapz(df["t"], df["y"]))
print(simps(df["t"], df["y"]))
trapz returns a value (-9.5865055e-10) while simps returns nan and the following error:
anacondapathscipyintegratequadrature.py:324: RuntimeWarning: divide by zero encountered in true_divide
h0divh1 = h0 / h1
anacondapathscipyintegratequadrature.py:326: RuntimeWarning: divide by zero encountered in true_divide
y[slice1]*hsum*hsum/hprod +
anacondapathscipyintegratequadrature.py:327: RuntimeWarning: invalid value encountered in add
y[slice2]*(2-h0divh1))
anacondapathscipyintegratequadrature.py:326: RuntimeWarning: invalid value encountered in add
y[slice1]*hsum*hsum/hprod +
Why does this error occur?
python math scipy integrate
I am trying to integrate the following data numerically:
t,y
9.960000000000001e-05,8.334379999999999e-05
9.98e-05,0.000126125
0.0001,0.00018125
0.0001002,0.0002385
0.00010040000000000001,0.000289625
0.0001006,0.000347313
0.0001008,0.000391719
0.000101,0.00043284399999999994
0.00010120000000000001,0.000472375
0.00010140000000000001,0.000502469
0.00010160000000000002,0.000528594
0.00010180000000000001,0.000546219
0.000102,0.000569188
0.0001022,0.000584719
0.0001024,0.000593969
0.00010260000000000001,0.000607375
0.0001028,0.000618906
0.000103,0.000629344
0.0001032,0.000629344
0.0001034,0.000636313
0.00010360000000000001,0.0006374999999999999
0.0001038,0.000630375
0.00010400000000000001,0.00059875
0.0001042,0.00046825
0.0001044,0.000287344
0.00010460000000000002,0.000208594
0.0001048,0.000196094
0.000105,0.000172625
0.00010520000000000001,0.000134781
0.0001054,0.000115906
0.0001056,0.00010306300000000001
0.00010580000000000001,9.31563e-05
As shown below, I read this data set from a csv file.
This is my code:
import pandas as pd
from scipy.integrate import trapz, simps
root="my/root/dir"
df = pd.read_csv(root+r"simps.csv")
print(trapz(df["t"], df["y"]))
print(simps(df["t"], df["y"]))
trapz returns a value (-9.5865055e-10) while simps returns nan and the following error:
anacondapathscipyintegratequadrature.py:324: RuntimeWarning: divide by zero encountered in true_divide
h0divh1 = h0 / h1
anacondapathscipyintegratequadrature.py:326: RuntimeWarning: divide by zero encountered in true_divide
y[slice1]*hsum*hsum/hprod +
anacondapathscipyintegratequadrature.py:327: RuntimeWarning: invalid value encountered in add
y[slice2]*(2-h0divh1))
anacondapathscipyintegratequadrature.py:326: RuntimeWarning: invalid value encountered in add
y[slice1]*hsum*hsum/hprod +
Why does this error occur?
python math scipy integrate
python math scipy integrate
asked Nov 16 '18 at 7:45
plane loverplane lover
234
234
add a comment |
add a comment |
1 Answer
1
active
oldest
votes
A very stupid mistake: I exchanged x and y. Simps requires y as a first argument
add a comment |
Your Answer
StackExchange.ifUsing("editor", function () {
StackExchange.using("externalEditor", function () {
StackExchange.using("snippets", function () {
StackExchange.snippets.init();
});
});
}, "code-snippets");
StackExchange.ready(function() {
var channelOptions = {
tags: "".split(" "),
id: "1"
};
initTagRenderer("".split(" "), "".split(" "), channelOptions);
StackExchange.using("externalEditor", function() {
// Have to fire editor after snippets, if snippets enabled
if (StackExchange.settings.snippets.snippetsEnabled) {
StackExchange.using("snippets", function() {
createEditor();
});
}
else {
createEditor();
}
});
function createEditor() {
StackExchange.prepareEditor({
heartbeatType: 'answer',
autoActivateHeartbeat: false,
convertImagesToLinks: true,
noModals: true,
showLowRepImageUploadWarning: true,
reputationToPostImages: 10,
bindNavPrevention: true,
postfix: "",
imageUploader: {
brandingHtml: "Powered by u003ca class="icon-imgur-white" href="https://imgur.com/"u003eu003c/au003e",
contentPolicyHtml: "User contributions licensed under u003ca href="https://creativecommons.org/licenses/by-sa/3.0/"u003ecc by-sa 3.0 with attribution requiredu003c/au003e u003ca href="https://stackoverflow.com/legal/content-policy"u003e(content policy)u003c/au003e",
allowUrls: true
},
onDemand: true,
discardSelector: ".discard-answer"
,immediatelyShowMarkdownHelp:true
});
}
});
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
StackExchange.ready(
function () {
StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53333471%2fnumerical-integration-with-scipy-integrate-trapz-returns-a-result-but-scipy-inte%23new-answer', 'question_page');
}
);
Post as a guest
Required, but never shown
1 Answer
1
active
oldest
votes
1 Answer
1
active
oldest
votes
active
oldest
votes
active
oldest
votes
A very stupid mistake: I exchanged x and y. Simps requires y as a first argument
add a comment |
A very stupid mistake: I exchanged x and y. Simps requires y as a first argument
add a comment |
A very stupid mistake: I exchanged x and y. Simps requires y as a first argument
A very stupid mistake: I exchanged x and y. Simps requires y as a first argument
answered Nov 16 '18 at 14:46
plane loverplane lover
234
234
add a comment |
add a comment |
Thanks for contributing an answer to Stack Overflow!
- Please be sure to answer the question. Provide details and share your research!
But avoid …
- Asking for help, clarification, or responding to other answers.
- Making statements based on opinion; back them up with references or personal experience.
To learn more, see our tips on writing great answers.
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
StackExchange.ready(
function () {
StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53333471%2fnumerical-integration-with-scipy-integrate-trapz-returns-a-result-but-scipy-inte%23new-answer', 'question_page');
}
);
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown