Cannot use graphviz in Google Cloud Datalab
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This is a tutorial about visualizing network diagrams using Google Cloud Datalab.
Everything worked perfectly (needs to change "gcp.bigquery" to "datalab.bigquery" in [25]) until:
In [35]:
%%bash
/usr/bin/yes | apt-get install graphviz
pip install --upgrade graphviz
/usr/bin/yes | pip uninstall pyparsing
pip install -Iv https://pypi.python.org/packages/source/p/pyparsing/pyparsing-1.5.7.tar.gz
pip install --upgrade pydot
Once I uninstalled pyparsing, the pip command cannot work and the next 2 lines cannot be executed correctly.
If I ignore the lines related to pyparsing, just install/upgrade graphviz and pydot, an error will occur at this line in "In [67]:" :
pos=nx.graphviz_layout(gmax, prog='circo')
AttributeError: 'module' object has no attribute 'graphviz_layout'
I don't think it is a pyparsing matter. Maybe the graphviz version is the point, since this tutorial was written about 2 years ago.
Any idea about it?
Thanks
python graphviz google-cloud-datalab
edited Apr 15 '17 at 12:27
illright
2,53221535
asked Apr 15 '17 at 9:17
ZrisoundZrisound
233
add a comment |
This is a tutorial about visualizing network diagrams using Google Cloud Datalab.
Everything worked perfectly (needs to change "gcp.bigquery" to "datalab.bigquery" in [25]) until:
In [35]:
%%bash
/usr/bin/yes | apt-get install graphviz
pip install --upgrade graphviz
/usr/bin/yes | pip uninstall pyparsing
pip install -Iv https://pypi.python.org/packages/source/p/pyparsing/pyparsing-1.5.7.tar.gz
pip install --upgrade pydot
Once I uninstalled pyparsing, the pip command cannot work and the next 2 lines cannot be executed correctly.
If I ignore the lines related to pyparsing, just install/upgrade graphviz and pydot, an error will occur at this line in "In [67]:" :
pos=nx.graphviz_layout(gmax, prog='circo')
AttributeError: 'module' object has no attribute 'graphviz_layout'
I don't think it is a pyparsing matter. Maybe the graphviz version is the point, since this tutorial was written about 2 years ago.
Any idea about it?
Thanks
python graphviz google-cloud-datalab
edited Apr 15 '17 at 12:27
illright
2,53221535
asked Apr 15 '17 at 9:17
ZrisoundZrisound
233
1
Possible duplicate of AttributeError: 'module' object has no attribute 'graphviz_layout' with networkx 1.11
– snakecharmerb
Apr 15 '17 at 10:31
add a comment |
This is a tutorial about visualizing network diagrams using Google Cloud Datalab.
Everything worked perfectly (needs to change "gcp.bigquery" to "datalab.bigquery" in [25]) until:
In [35]:
%%bash
/usr/bin/yes | apt-get install graphviz
pip install --upgrade graphviz
/usr/bin/yes | pip uninstall pyparsing
pip install -Iv https://pypi.python.org/packages/source/p/pyparsing/pyparsing-1.5.7.tar.gz
pip install --upgrade pydot
Once I uninstalled pyparsing, the pip command cannot work and the next 2 lines cannot be executed correctly.
If I ignore the lines related to pyparsing, just install/upgrade graphviz and pydot, an error will occur at this line in "In [67]:" :
pos=nx.graphviz_layout(gmax, prog='circo')
AttributeError: 'module' object has no attribute 'graphviz_layout'
I don't think it is a pyparsing matter. Maybe the graphviz version is the point, since this tutorial was written about 2 years ago.
Any idea about it?
Thanks
python graphviz google-cloud-datalab
edited Apr 15 '17 at 12:27
illright
2,53221535
asked Apr 15 '17 at 9:17
ZrisoundZrisound
233
This is a tutorial about visualizing network diagrams using Google Cloud Datalab.
Everything worked perfectly (needs to change "gcp.bigquery" to "datalab.bigquery" in [25]) until:
In [35]:
%%bash
/usr/bin/yes | apt-get install graphviz
pip install --upgrade graphviz
/usr/bin/yes | pip uninstall pyparsing
pip install -Iv https://pypi.python.org/packages/source/p/pyparsing/pyparsing-1.5.7.tar.gz
pip install --upgrade pydot
Once I uninstalled pyparsing, the pip command cannot work and the next 2 lines cannot be executed correctly.
If I ignore the lines related to pyparsing, just install/upgrade graphviz and pydot, an error will occur at this line in "In [67]:" :
pos=nx.graphviz_layout(gmax, prog='circo')
AttributeError: 'module' object has no attribute 'graphviz_layout'
I don't think it is a pyparsing matter. Maybe the graphviz version is the point, since this tutorial was written about 2 years ago.
Any idea about it?
Thanks
python graphviz google-cloud-datalab
python graphviz google-cloud-datalab
edited Apr 15 '17 at 12:27
illright
2,53221535
asked Apr 15 '17 at 9:17
ZrisoundZrisound
233
edited Apr 15 '17 at 12:27
illright
2,53221535
asked Apr 15 '17 at 9:17
ZrisoundZrisound
233
edited Apr 15 '17 at 12:27
illright
2,53221535
edited Apr 15 '17 at 12:27
illright
2,53221535
edited Apr 15 '17 at 12:27
illright
2,53221535
2,53221535
asked Apr 15 '17 at 9:17
ZrisoundZrisound
233
asked Apr 15 '17 at 9:17
ZrisoundZrisound
233
asked Apr 15 '17 at 9:17
ZrisoundZrisound
233
233
1
Possible duplicate of AttributeError: 'module' object has no attribute 'graphviz_layout' with networkx 1.11
– snakecharmerb
Apr 15 '17 at 10:31
add a comment |
1
Possible duplicate of AttributeError: 'module' object has no attribute 'graphviz_layout' with networkx 1.11
– snakecharmerb
Apr 15 '17 at 10:31
1
1
Possible duplicate of AttributeError: 'module' object has no attribute 'graphviz_layout' with networkx 1.11
– snakecharmerb
Apr 15 '17 at 10:31
Possible duplicate of AttributeError: 'module' object has no attribute 'graphviz_layout' with networkx 1.11
– snakecharmerb
Apr 15 '17 at 10:31
add a comment |
1 Answer
1
active
oldest
votes
The network graph displayed correctly after I changed
pos=nx.graphviz_layout(gmax, prog='circo')
to
pos=nx.nx_pydot.graphviz_layout(gmax, prog='circo')
based on this StackOverflow post. This required pydotplus so I also updated one of the cells with %%bash. I ran
%%bash
apt-get update
apt-get install -y graphviz
pip install pydot
pip install graphviz
pip install pydotplus
instead of
%%bash
/usr/bin/yes | apt-get install graphviz
pip install --upgrade graphviz
/usr/bin/yes | pip uninstall pyparsing
pip install -Iv https://pypi.python.org/packages/source/p/pyparsing/pyparsing-1.5.7.tar.gz
pip install --upgrade pydot
I hope this helps!
edited May 23 '17 at 11:54
Community♦
11
answered Apr 15 '17 at 16:54
Anthonios PartheniouAnthonios Partheniou
1,50811022
add a comment |
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1 Answer
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active
oldest
votes
1 Answer
1
active
oldest
votes
active
oldest
votes
active
oldest
votes
The network graph displayed correctly after I changed
pos=nx.graphviz_layout(gmax, prog='circo')
to
pos=nx.nx_pydot.graphviz_layout(gmax, prog='circo')
based on this StackOverflow post. This required pydotplus so I also updated one of the cells with %%bash. I ran
%%bash
apt-get update
apt-get install -y graphviz
pip install pydot
pip install graphviz
pip install pydotplus
instead of
%%bash
/usr/bin/yes | apt-get install graphviz
pip install --upgrade graphviz
/usr/bin/yes | pip uninstall pyparsing
pip install -Iv https://pypi.python.org/packages/source/p/pyparsing/pyparsing-1.5.7.tar.gz
pip install --upgrade pydot
I hope this helps!
edited May 23 '17 at 11:54
Community♦
11
answered Apr 15 '17 at 16:54
Anthonios PartheniouAnthonios Partheniou
1,50811022
add a comment |
The network graph displayed correctly after I changed
pos=nx.graphviz_layout(gmax, prog='circo')
to
pos=nx.nx_pydot.graphviz_layout(gmax, prog='circo')
based on this StackOverflow post. This required pydotplus so I also updated one of the cells with %%bash. I ran
%%bash
apt-get update
apt-get install -y graphviz
pip install pydot
pip install graphviz
pip install pydotplus
instead of
%%bash
/usr/bin/yes | apt-get install graphviz
pip install --upgrade graphviz
/usr/bin/yes | pip uninstall pyparsing
pip install -Iv https://pypi.python.org/packages/source/p/pyparsing/pyparsing-1.5.7.tar.gz
pip install --upgrade pydot
I hope this helps!
edited May 23 '17 at 11:54
Community♦
11
answered Apr 15 '17 at 16:54
Anthonios PartheniouAnthonios Partheniou
1,50811022
add a comment |
The network graph displayed correctly after I changed
pos=nx.graphviz_layout(gmax, prog='circo')
to
pos=nx.nx_pydot.graphviz_layout(gmax, prog='circo')
based on this StackOverflow post. This required pydotplus so I also updated one of the cells with %%bash. I ran
%%bash
apt-get update
apt-get install -y graphviz
pip install pydot
pip install graphviz
pip install pydotplus
instead of
%%bash
/usr/bin/yes | apt-get install graphviz
pip install --upgrade graphviz
/usr/bin/yes | pip uninstall pyparsing
pip install -Iv https://pypi.python.org/packages/source/p/pyparsing/pyparsing-1.5.7.tar.gz
pip install --upgrade pydot
I hope this helps!
edited May 23 '17 at 11:54
Community♦
11
answered Apr 15 '17 at 16:54
Anthonios PartheniouAnthonios Partheniou
1,50811022
The network graph displayed correctly after I changed
pos=nx.graphviz_layout(gmax, prog='circo')
to
pos=nx.nx_pydot.graphviz_layout(gmax, prog='circo')
based on this StackOverflow post. This required pydotplus so I also updated one of the cells with %%bash. I ran
%%bash
apt-get update
apt-get install -y graphviz
pip install pydot
pip install graphviz
pip install pydotplus
instead of
%%bash
/usr/bin/yes | apt-get install graphviz
pip install --upgrade graphviz
/usr/bin/yes | pip uninstall pyparsing
pip install -Iv https://pypi.python.org/packages/source/p/pyparsing/pyparsing-1.5.7.tar.gz
pip install --upgrade pydot
I hope this helps!
edited May 23 '17 at 11:54
Community♦
11
answered Apr 15 '17 at 16:54
Anthonios PartheniouAnthonios Partheniou
1,50811022
edited May 23 '17 at 11:54
Community♦
11
edited May 23 '17 at 11:54
Community♦
11
edited May 23 '17 at 11:54
Community♦
11
11
answered Apr 15 '17 at 16:54
Anthonios PartheniouAnthonios Partheniou
1,50811022
answered Apr 15 '17 at 16:54
Anthonios PartheniouAnthonios Partheniou
1,50811022
answered Apr 15 '17 at 16:54
Anthonios PartheniouAnthonios Partheniou
1,50811022
1,50811022
add a comment |
add a comment |
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1
Possible duplicate of AttributeError: 'module' object has no attribute 'graphviz_layout' with networkx 1.11
– snakecharmerb
Apr 15 '17 at 10:31