Cannot use graphviz in Google Cloud Datalab





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This is a tutorial about visualizing network diagrams using Google Cloud Datalab.



Everything worked perfectly (needs to change "gcp.bigquery" to "datalab.bigquery" in [25]) until:



In [35]:

%%bash
/usr/bin/yes | apt-get install graphviz
pip install --upgrade graphviz
/usr/bin/yes | pip uninstall pyparsing
pip install -Iv https://pypi.python.org/packages/source/p/pyparsing/pyparsing-1.5.7.tar.gz
pip install --upgrade pydot


Once I uninstalled pyparsing, the pip command cannot work and the next 2 lines cannot be executed correctly.



If I ignore the lines related to pyparsing, just install/upgrade graphviz and pydot, an error will occur at this line in "In [67]:" :



pos=nx.graphviz_layout(gmax, prog='circo')



AttributeError: 'module' object has no attribute 'graphviz_layout'




I don't think it is a pyparsing matter. Maybe the graphviz version is the point, since this tutorial was written about 2 years ago.



Any idea about it?



Thanks










share|improve this question




















  • 1





    Possible duplicate of AttributeError: 'module' object has no attribute 'graphviz_layout' with networkx 1.11

    – snakecharmerb
    Apr 15 '17 at 10:31


















1















This is a tutorial about visualizing network diagrams using Google Cloud Datalab.



Everything worked perfectly (needs to change "gcp.bigquery" to "datalab.bigquery" in [25]) until:



In [35]:

%%bash
/usr/bin/yes | apt-get install graphviz
pip install --upgrade graphviz
/usr/bin/yes | pip uninstall pyparsing
pip install -Iv https://pypi.python.org/packages/source/p/pyparsing/pyparsing-1.5.7.tar.gz
pip install --upgrade pydot


Once I uninstalled pyparsing, the pip command cannot work and the next 2 lines cannot be executed correctly.



If I ignore the lines related to pyparsing, just install/upgrade graphviz and pydot, an error will occur at this line in "In [67]:" :



pos=nx.graphviz_layout(gmax, prog='circo')



AttributeError: 'module' object has no attribute 'graphviz_layout'




I don't think it is a pyparsing matter. Maybe the graphviz version is the point, since this tutorial was written about 2 years ago.



Any idea about it?



Thanks










share|improve this question




















  • 1





    Possible duplicate of AttributeError: 'module' object has no attribute 'graphviz_layout' with networkx 1.11

    – snakecharmerb
    Apr 15 '17 at 10:31














1












1








1


1






This is a tutorial about visualizing network diagrams using Google Cloud Datalab.



Everything worked perfectly (needs to change "gcp.bigquery" to "datalab.bigquery" in [25]) until:



In [35]:

%%bash
/usr/bin/yes | apt-get install graphviz
pip install --upgrade graphviz
/usr/bin/yes | pip uninstall pyparsing
pip install -Iv https://pypi.python.org/packages/source/p/pyparsing/pyparsing-1.5.7.tar.gz
pip install --upgrade pydot


Once I uninstalled pyparsing, the pip command cannot work and the next 2 lines cannot be executed correctly.



If I ignore the lines related to pyparsing, just install/upgrade graphviz and pydot, an error will occur at this line in "In [67]:" :



pos=nx.graphviz_layout(gmax, prog='circo')



AttributeError: 'module' object has no attribute 'graphviz_layout'




I don't think it is a pyparsing matter. Maybe the graphviz version is the point, since this tutorial was written about 2 years ago.



Any idea about it?



Thanks










share|improve this question
















This is a tutorial about visualizing network diagrams using Google Cloud Datalab.



Everything worked perfectly (needs to change "gcp.bigquery" to "datalab.bigquery" in [25]) until:



In [35]:

%%bash
/usr/bin/yes | apt-get install graphviz
pip install --upgrade graphviz
/usr/bin/yes | pip uninstall pyparsing
pip install -Iv https://pypi.python.org/packages/source/p/pyparsing/pyparsing-1.5.7.tar.gz
pip install --upgrade pydot


Once I uninstalled pyparsing, the pip command cannot work and the next 2 lines cannot be executed correctly.



If I ignore the lines related to pyparsing, just install/upgrade graphviz and pydot, an error will occur at this line in "In [67]:" :



pos=nx.graphviz_layout(gmax, prog='circo')



AttributeError: 'module' object has no attribute 'graphviz_layout'




I don't think it is a pyparsing matter. Maybe the graphviz version is the point, since this tutorial was written about 2 years ago.



Any idea about it?



Thanks







python graphviz google-cloud-datalab






share|improve this question















share|improve this question













share|improve this question




share|improve this question








edited Apr 15 '17 at 12:27









illright

2,53221535




2,53221535










asked Apr 15 '17 at 9:17









ZrisoundZrisound

233




233








  • 1





    Possible duplicate of AttributeError: 'module' object has no attribute 'graphviz_layout' with networkx 1.11

    – snakecharmerb
    Apr 15 '17 at 10:31














  • 1





    Possible duplicate of AttributeError: 'module' object has no attribute 'graphviz_layout' with networkx 1.11

    – snakecharmerb
    Apr 15 '17 at 10:31








1




1





Possible duplicate of AttributeError: 'module' object has no attribute 'graphviz_layout' with networkx 1.11

– snakecharmerb
Apr 15 '17 at 10:31





Possible duplicate of AttributeError: 'module' object has no attribute 'graphviz_layout' with networkx 1.11

– snakecharmerb
Apr 15 '17 at 10:31












1 Answer
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oldest

votes


















3














The network graph displayed correctly after I changed



pos=nx.graphviz_layout(gmax, prog='circo')


to



pos=nx.nx_pydot.graphviz_layout(gmax, prog='circo')


based on this StackOverflow post. This required pydotplus so I also updated one of the cells with %%bash. I ran



%%bash
apt-get update
apt-get install -y graphviz
pip install pydot
pip install graphviz
pip install pydotplus


instead of



%%bash
/usr/bin/yes | apt-get install graphviz
pip install --upgrade graphviz
/usr/bin/yes | pip uninstall pyparsing
pip install -Iv https://pypi.python.org/packages/source/p/pyparsing/pyparsing-1.5.7.tar.gz
pip install --upgrade pydot


I hope this helps!






share|improve this answer


























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    The network graph displayed correctly after I changed



    pos=nx.graphviz_layout(gmax, prog='circo')


    to



    pos=nx.nx_pydot.graphviz_layout(gmax, prog='circo')


    based on this StackOverflow post. This required pydotplus so I also updated one of the cells with %%bash. I ran



    %%bash
    apt-get update
    apt-get install -y graphviz
    pip install pydot
    pip install graphviz
    pip install pydotplus


    instead of



    %%bash
    /usr/bin/yes | apt-get install graphviz
    pip install --upgrade graphviz
    /usr/bin/yes | pip uninstall pyparsing
    pip install -Iv https://pypi.python.org/packages/source/p/pyparsing/pyparsing-1.5.7.tar.gz
    pip install --upgrade pydot


    I hope this helps!






    share|improve this answer






























      3














      The network graph displayed correctly after I changed



      pos=nx.graphviz_layout(gmax, prog='circo')


      to



      pos=nx.nx_pydot.graphviz_layout(gmax, prog='circo')


      based on this StackOverflow post. This required pydotplus so I also updated one of the cells with %%bash. I ran



      %%bash
      apt-get update
      apt-get install -y graphviz
      pip install pydot
      pip install graphviz
      pip install pydotplus


      instead of



      %%bash
      /usr/bin/yes | apt-get install graphviz
      pip install --upgrade graphviz
      /usr/bin/yes | pip uninstall pyparsing
      pip install -Iv https://pypi.python.org/packages/source/p/pyparsing/pyparsing-1.5.7.tar.gz
      pip install --upgrade pydot


      I hope this helps!






      share|improve this answer




























        3












        3








        3







        The network graph displayed correctly after I changed



        pos=nx.graphviz_layout(gmax, prog='circo')


        to



        pos=nx.nx_pydot.graphviz_layout(gmax, prog='circo')


        based on this StackOverflow post. This required pydotplus so I also updated one of the cells with %%bash. I ran



        %%bash
        apt-get update
        apt-get install -y graphviz
        pip install pydot
        pip install graphviz
        pip install pydotplus


        instead of



        %%bash
        /usr/bin/yes | apt-get install graphviz
        pip install --upgrade graphviz
        /usr/bin/yes | pip uninstall pyparsing
        pip install -Iv https://pypi.python.org/packages/source/p/pyparsing/pyparsing-1.5.7.tar.gz
        pip install --upgrade pydot


        I hope this helps!






        share|improve this answer















        The network graph displayed correctly after I changed



        pos=nx.graphviz_layout(gmax, prog='circo')


        to



        pos=nx.nx_pydot.graphviz_layout(gmax, prog='circo')


        based on this StackOverflow post. This required pydotplus so I also updated one of the cells with %%bash. I ran



        %%bash
        apt-get update
        apt-get install -y graphviz
        pip install pydot
        pip install graphviz
        pip install pydotplus


        instead of



        %%bash
        /usr/bin/yes | apt-get install graphviz
        pip install --upgrade graphviz
        /usr/bin/yes | pip uninstall pyparsing
        pip install -Iv https://pypi.python.org/packages/source/p/pyparsing/pyparsing-1.5.7.tar.gz
        pip install --upgrade pydot


        I hope this helps!







        share|improve this answer














        share|improve this answer



        share|improve this answer








        edited May 23 '17 at 11:54









        Community

        11




        11










        answered Apr 15 '17 at 16:54









        Anthonios PartheniouAnthonios Partheniou

        1,50811022




        1,50811022
































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