Error when using sobolSmthSpl function in R











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I'm trying to use the sensitivity package to calculate sobol sensitivity indices from my parameters and model outputs. This function sobolSmthSpl in the package is supposed to do this but I just keep getting the error



    Error: $ operator is invalid for atomic vectors
In addition: Warning message:
In parallel::mclapply(1:ncol(Y), function(i) smooth.spline(X[, i], :
all scheduled cores encountered errors in user code*


I've made the classes of the variables the same to the example, but just can't get rid of the error. Has anyone used this function before or have met a similar problem?



Here is the code of the function



    function (Y, X) 
{
ANS = list()
ANS[["call"]] = match.call()
ANS[["X"]] = X
ANS[["Y"]] = Y
par.names = colnames(X)
if (is.null(colnames(X)))
par.names = paste0("X", 1:ncol(X))
X = normalize(X)
Y = Y - mean(Y)
Y = sapply(1:ncol(X), function(i) return(Y[order(X[, i])]))
X = sapply(1:ncol(X), function(i) return(X[order(X[, i]),
i]))
SMTH = optSmooth(Y, X, c(-2, 2))
SA.tab = t(sapply(SMTH, est.Si))
colnames(SA.tab) = c("Si", "se", "q0.05")
rownames(SA.tab) = par.names
ANS[["S"]] = SA.tab
class(ANS) = "sobolSmthSpl"
return(ANS)
}









share|improve this question


























    up vote
    0
    down vote

    favorite












    I'm trying to use the sensitivity package to calculate sobol sensitivity indices from my parameters and model outputs. This function sobolSmthSpl in the package is supposed to do this but I just keep getting the error



        Error: $ operator is invalid for atomic vectors
    In addition: Warning message:
    In parallel::mclapply(1:ncol(Y), function(i) smooth.spline(X[, i], :
    all scheduled cores encountered errors in user code*


    I've made the classes of the variables the same to the example, but just can't get rid of the error. Has anyone used this function before or have met a similar problem?



    Here is the code of the function



        function (Y, X) 
    {
    ANS = list()
    ANS[["call"]] = match.call()
    ANS[["X"]] = X
    ANS[["Y"]] = Y
    par.names = colnames(X)
    if (is.null(colnames(X)))
    par.names = paste0("X", 1:ncol(X))
    X = normalize(X)
    Y = Y - mean(Y)
    Y = sapply(1:ncol(X), function(i) return(Y[order(X[, i])]))
    X = sapply(1:ncol(X), function(i) return(X[order(X[, i]),
    i]))
    SMTH = optSmooth(Y, X, c(-2, 2))
    SA.tab = t(sapply(SMTH, est.Si))
    colnames(SA.tab) = c("Si", "se", "q0.05")
    rownames(SA.tab) = par.names
    ANS[["S"]] = SA.tab
    class(ANS) = "sobolSmthSpl"
    return(ANS)
    }









    share|improve this question
























      up vote
      0
      down vote

      favorite









      up vote
      0
      down vote

      favorite











      I'm trying to use the sensitivity package to calculate sobol sensitivity indices from my parameters and model outputs. This function sobolSmthSpl in the package is supposed to do this but I just keep getting the error



          Error: $ operator is invalid for atomic vectors
      In addition: Warning message:
      In parallel::mclapply(1:ncol(Y), function(i) smooth.spline(X[, i], :
      all scheduled cores encountered errors in user code*


      I've made the classes of the variables the same to the example, but just can't get rid of the error. Has anyone used this function before or have met a similar problem?



      Here is the code of the function



          function (Y, X) 
      {
      ANS = list()
      ANS[["call"]] = match.call()
      ANS[["X"]] = X
      ANS[["Y"]] = Y
      par.names = colnames(X)
      if (is.null(colnames(X)))
      par.names = paste0("X", 1:ncol(X))
      X = normalize(X)
      Y = Y - mean(Y)
      Y = sapply(1:ncol(X), function(i) return(Y[order(X[, i])]))
      X = sapply(1:ncol(X), function(i) return(X[order(X[, i]),
      i]))
      SMTH = optSmooth(Y, X, c(-2, 2))
      SA.tab = t(sapply(SMTH, est.Si))
      colnames(SA.tab) = c("Si", "se", "q0.05")
      rownames(SA.tab) = par.names
      ANS[["S"]] = SA.tab
      class(ANS) = "sobolSmthSpl"
      return(ANS)
      }









      share|improve this question













      I'm trying to use the sensitivity package to calculate sobol sensitivity indices from my parameters and model outputs. This function sobolSmthSpl in the package is supposed to do this but I just keep getting the error



          Error: $ operator is invalid for atomic vectors
      In addition: Warning message:
      In parallel::mclapply(1:ncol(Y), function(i) smooth.spline(X[, i], :
      all scheduled cores encountered errors in user code*


      I've made the classes of the variables the same to the example, but just can't get rid of the error. Has anyone used this function before or have met a similar problem?



      Here is the code of the function



          function (Y, X) 
      {
      ANS = list()
      ANS[["call"]] = match.call()
      ANS[["X"]] = X
      ANS[["Y"]] = Y
      par.names = colnames(X)
      if (is.null(colnames(X)))
      par.names = paste0("X", 1:ncol(X))
      X = normalize(X)
      Y = Y - mean(Y)
      Y = sapply(1:ncol(X), function(i) return(Y[order(X[, i])]))
      X = sapply(1:ncol(X), function(i) return(X[order(X[, i]),
      i]))
      SMTH = optSmooth(Y, X, c(-2, 2))
      SA.tab = t(sapply(SMTH, est.Si))
      colnames(SA.tab) = c("Si", "se", "q0.05")
      rownames(SA.tab) = par.names
      ANS[["S"]] = SA.tab
      class(ANS) = "sobolSmthSpl"
      return(ANS)
      }






      r






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      asked Nov 10 at 20:40









      Mingyang Guo

      143




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