Inconsistent figure note line spacing rendering pdf in Bookdown











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I am trying to insert a figure note to render in pdf from the following code chunk:



``{r boxfreshAe, out.width = c("49%","49%","49%","49%"),fig.align = "center", warning=FALSE, message=FALSE, error=FALSE, fig.pos="H",fig.show = 'hold', fig.cap='(ref:boxfreshAe)', echo=FALSE}


the text note reads like this:



(ref:boxfreshAe) Forest of Ae - boxplot of fresh example (%) by management example. A): 0 - 15 cm depth; B): 15 - 30 cm depth; C): litter example; D): H horizon. Displayed are minimum, twenty-fifth percentile, fiftyeth percentile, seventy-fifth percentile and maximum. Black dots are observations that may be outliers accoring to the rule ± 1.5 * interquartile range, this being determined as as the upper quartile minus the lower quartile [@reference2015]. Same colour / shape dots are same block replication.



but also this would work the same:



(ref:boxfreshAe) example example example example example example example example example example example example example example example exampleexample example example example example example example exampleexample example example exampleexample example example example



the above chunk contains box-and-whiskers plots and results in a pdf with a figure note that looks like this:





enter image description here





This is not what I want because the figure is using the layout of the main text of my book which I setup in the index.Rmd with linestretch: 2.



Instead, when I insert a photo the figure note has a reduced line spacing. I would like this spacing (below) to be also in the figure above.



(ref:shallow-Hhor) detail of the H horizon in the Control treatment. This was consistently < 5 cm deep.



```{r shallow-Hhor, out.width = "50%" , fig.align="center",fig.pos="h", fig.cap='(ref:shallow-Hhor)', echo=FALSE}




enter image description here





Any help is very welcome, many thanks in advance.










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    down vote

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    I am trying to insert a figure note to render in pdf from the following code chunk:



    ``{r boxfreshAe, out.width = c("49%","49%","49%","49%"),fig.align = "center", warning=FALSE, message=FALSE, error=FALSE, fig.pos="H",fig.show = 'hold', fig.cap='(ref:boxfreshAe)', echo=FALSE}


    the text note reads like this:



    (ref:boxfreshAe) Forest of Ae - boxplot of fresh example (%) by management example. A): 0 - 15 cm depth; B): 15 - 30 cm depth; C): litter example; D): H horizon. Displayed are minimum, twenty-fifth percentile, fiftyeth percentile, seventy-fifth percentile and maximum. Black dots are observations that may be outliers accoring to the rule ± 1.5 * interquartile range, this being determined as as the upper quartile minus the lower quartile [@reference2015]. Same colour / shape dots are same block replication.



    but also this would work the same:



    (ref:boxfreshAe) example example example example example example example example example example example example example example example exampleexample example example example example example example exampleexample example example exampleexample example example example



    the above chunk contains box-and-whiskers plots and results in a pdf with a figure note that looks like this:





    enter image description here





    This is not what I want because the figure is using the layout of the main text of my book which I setup in the index.Rmd with linestretch: 2.



    Instead, when I insert a photo the figure note has a reduced line spacing. I would like this spacing (below) to be also in the figure above.



    (ref:shallow-Hhor) detail of the H horizon in the Control treatment. This was consistently < 5 cm deep.



    ```{r shallow-Hhor, out.width = "50%" , fig.align="center",fig.pos="h", fig.cap='(ref:shallow-Hhor)', echo=FALSE}




    enter image description here





    Any help is very welcome, many thanks in advance.










    share|improve this question


























      up vote
      0
      down vote

      favorite









      up vote
      0
      down vote

      favorite











      I am trying to insert a figure note to render in pdf from the following code chunk:



      ``{r boxfreshAe, out.width = c("49%","49%","49%","49%"),fig.align = "center", warning=FALSE, message=FALSE, error=FALSE, fig.pos="H",fig.show = 'hold', fig.cap='(ref:boxfreshAe)', echo=FALSE}


      the text note reads like this:



      (ref:boxfreshAe) Forest of Ae - boxplot of fresh example (%) by management example. A): 0 - 15 cm depth; B): 15 - 30 cm depth; C): litter example; D): H horizon. Displayed are minimum, twenty-fifth percentile, fiftyeth percentile, seventy-fifth percentile and maximum. Black dots are observations that may be outliers accoring to the rule ± 1.5 * interquartile range, this being determined as as the upper quartile minus the lower quartile [@reference2015]. Same colour / shape dots are same block replication.



      but also this would work the same:



      (ref:boxfreshAe) example example example example example example example example example example example example example example example exampleexample example example example example example example exampleexample example example exampleexample example example example



      the above chunk contains box-and-whiskers plots and results in a pdf with a figure note that looks like this:





      enter image description here





      This is not what I want because the figure is using the layout of the main text of my book which I setup in the index.Rmd with linestretch: 2.



      Instead, when I insert a photo the figure note has a reduced line spacing. I would like this spacing (below) to be also in the figure above.



      (ref:shallow-Hhor) detail of the H horizon in the Control treatment. This was consistently < 5 cm deep.



      ```{r shallow-Hhor, out.width = "50%" , fig.align="center",fig.pos="h", fig.cap='(ref:shallow-Hhor)', echo=FALSE}




      enter image description here





      Any help is very welcome, many thanks in advance.










      share|improve this question















      I am trying to insert a figure note to render in pdf from the following code chunk:



      ``{r boxfreshAe, out.width = c("49%","49%","49%","49%"),fig.align = "center", warning=FALSE, message=FALSE, error=FALSE, fig.pos="H",fig.show = 'hold', fig.cap='(ref:boxfreshAe)', echo=FALSE}


      the text note reads like this:



      (ref:boxfreshAe) Forest of Ae - boxplot of fresh example (%) by management example. A): 0 - 15 cm depth; B): 15 - 30 cm depth; C): litter example; D): H horizon. Displayed are minimum, twenty-fifth percentile, fiftyeth percentile, seventy-fifth percentile and maximum. Black dots are observations that may be outliers accoring to the rule ± 1.5 * interquartile range, this being determined as as the upper quartile minus the lower quartile [@reference2015]. Same colour / shape dots are same block replication.



      but also this would work the same:



      (ref:boxfreshAe) example example example example example example example example example example example example example example example exampleexample example example example example example example exampleexample example example exampleexample example example example



      the above chunk contains box-and-whiskers plots and results in a pdf with a figure note that looks like this:





      enter image description here





      This is not what I want because the figure is using the layout of the main text of my book which I setup in the index.Rmd with linestretch: 2.



      Instead, when I insert a photo the figure note has a reduced line spacing. I would like this spacing (below) to be also in the figure above.



      (ref:shallow-Hhor) detail of the H horizon in the Control treatment. This was consistently < 5 cm deep.



      ```{r shallow-Hhor, out.width = "50%" , fig.align="center",fig.pos="h", fig.cap='(ref:shallow-Hhor)', echo=FALSE}




      enter image description here





      Any help is very welcome, many thanks in advance.







      r pdf bookdown cross-reference line-spacing






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      edited Nov 11 at 14:21

























      asked Nov 11 at 12:25









      BAlpine

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          I solved the problem by changing the chunk option from fig.pos="H" to fig.pos="!h"






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            1 Answer
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            active

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            active

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            active

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            up vote
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            down vote



            accepted










            I solved the problem by changing the chunk option from fig.pos="H" to fig.pos="!h"






            share|improve this answer

























              up vote
              0
              down vote



              accepted










              I solved the problem by changing the chunk option from fig.pos="H" to fig.pos="!h"






              share|improve this answer























                up vote
                0
                down vote



                accepted







                up vote
                0
                down vote



                accepted






                I solved the problem by changing the chunk option from fig.pos="H" to fig.pos="!h"






                share|improve this answer












                I solved the problem by changing the chunk option from fig.pos="H" to fig.pos="!h"







                share|improve this answer












                share|improve this answer



                share|improve this answer










                answered Nov 13 at 11:46









                BAlpine

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