Problems creating hyperlinks on Excel Mac with xlsx r package
I am trying to create an Excel File with r which should include hyperlinks to a website. Everything works fine and can be tested on Windows, but on my Mac it somehow fails... I get the message that
Unable to open "LINK". Cannot locate the internet server or proxy server.
I am not sure if the problem is my excel, my mac or whatever. Could somebody help me to narrow the problem down?
EDIT: I just figured out, google works for example. Updated my example.
Here is a reproducible example
library(xlsx)
df <- data.frame(
Protein.IDs=c("A0A024QZN2;Q8WXX5;Q2VIL4",
"A0A024QZY5;Q13523;B4DZQ5;H0YDJ3;D3DWH5"),
stringsAsFactors=FALSE
)
df$Uniprot <-
sprintf('https://www.uniprot.org/uniprot/?query=%s',
sapply(strsplit(df$Protein.IDs, ';'), paste, collapse='+OR+'))
df <- rbind(df, c('google link', 'https://google.de')) # EDIT: google works?
excel_wb <- createWorkbook()
sheet <- xlsx::createSheet(excel_wb, sheetName='proteins')
addDataFrame(df, sheet, col.names = TRUE, row.names = FALSE)
rows <- getRows(sheet)
cells <- getCells(rows, colIndex=grep('^Uniprot$', names(df)))
invisible(sapply(cells[-1], function(x) {
addHyperlink(x, getCellValue(x))
setCellValue(x, 'Uniprot Link')
}))
rMQanalysis::saveWorkbookMQ(excel_wb, 'uniprottest.xlsx')
r macos xlsx excel-2011
asked Nov 16 '18 at 10:28
drmarioddrmariod
4,61512767
add a comment |
I am trying to create an Excel File with r which should include hyperlinks to a website. Everything works fine and can be tested on Windows, but on my Mac it somehow fails... I get the message that
Unable to open "LINK". Cannot locate the internet server or proxy server.
I am not sure if the problem is my excel, my mac or whatever. Could somebody help me to narrow the problem down?
EDIT: I just figured out, google works for example. Updated my example.
Here is a reproducible example
library(xlsx)
df <- data.frame(
Protein.IDs=c("A0A024QZN2;Q8WXX5;Q2VIL4",
"A0A024QZY5;Q13523;B4DZQ5;H0YDJ3;D3DWH5"),
stringsAsFactors=FALSE
)
df$Uniprot <-
sprintf('https://www.uniprot.org/uniprot/?query=%s',
sapply(strsplit(df$Protein.IDs, ';'), paste, collapse='+OR+'))
df <- rbind(df, c('google link', 'https://google.de')) # EDIT: google works?
excel_wb <- createWorkbook()
sheet <- xlsx::createSheet(excel_wb, sheetName='proteins')
addDataFrame(df, sheet, col.names = TRUE, row.names = FALSE)
rows <- getRows(sheet)
cells <- getCells(rows, colIndex=grep('^Uniprot$', names(df)))
invisible(sapply(cells[-1], function(x) {
addHyperlink(x, getCellValue(x))
setCellValue(x, 'Uniprot Link')
}))
rMQanalysis::saveWorkbookMQ(excel_wb, 'uniprottest.xlsx')
r macos xlsx excel-2011
asked Nov 16 '18 at 10:28
drmarioddrmariod
4,61512767
add a comment |
I am trying to create an Excel File with r which should include hyperlinks to a website. Everything works fine and can be tested on Windows, but on my Mac it somehow fails... I get the message that
Unable to open "LINK". Cannot locate the internet server or proxy server.
I am not sure if the problem is my excel, my mac or whatever. Could somebody help me to narrow the problem down?
EDIT: I just figured out, google works for example. Updated my example.
Here is a reproducible example
library(xlsx)
df <- data.frame(
Protein.IDs=c("A0A024QZN2;Q8WXX5;Q2VIL4",
"A0A024QZY5;Q13523;B4DZQ5;H0YDJ3;D3DWH5"),
stringsAsFactors=FALSE
)
df$Uniprot <-
sprintf('https://www.uniprot.org/uniprot/?query=%s',
sapply(strsplit(df$Protein.IDs, ';'), paste, collapse='+OR+'))
df <- rbind(df, c('google link', 'https://google.de')) # EDIT: google works?
excel_wb <- createWorkbook()
sheet <- xlsx::createSheet(excel_wb, sheetName='proteins')
addDataFrame(df, sheet, col.names = TRUE, row.names = FALSE)
rows <- getRows(sheet)
cells <- getCells(rows, colIndex=grep('^Uniprot$', names(df)))
invisible(sapply(cells[-1], function(x) {
addHyperlink(x, getCellValue(x))
setCellValue(x, 'Uniprot Link')
}))
rMQanalysis::saveWorkbookMQ(excel_wb, 'uniprottest.xlsx')
r macos xlsx excel-2011
asked Nov 16 '18 at 10:28
drmarioddrmariod
4,61512767
I am trying to create an Excel File with r which should include hyperlinks to a website. Everything works fine and can be tested on Windows, but on my Mac it somehow fails... I get the message that
Unable to open "LINK". Cannot locate the internet server or proxy server.
I am not sure if the problem is my excel, my mac or whatever. Could somebody help me to narrow the problem down?
EDIT: I just figured out, google works for example. Updated my example.
Here is a reproducible example
library(xlsx)
df <- data.frame(
Protein.IDs=c("A0A024QZN2;Q8WXX5;Q2VIL4",
"A0A024QZY5;Q13523;B4DZQ5;H0YDJ3;D3DWH5"),
stringsAsFactors=FALSE
)
df$Uniprot <-
sprintf('https://www.uniprot.org/uniprot/?query=%s',
sapply(strsplit(df$Protein.IDs, ';'), paste, collapse='+OR+'))
df <- rbind(df, c('google link', 'https://google.de')) # EDIT: google works?
excel_wb <- createWorkbook()
sheet <- xlsx::createSheet(excel_wb, sheetName='proteins')
addDataFrame(df, sheet, col.names = TRUE, row.names = FALSE)
rows <- getRows(sheet)
cells <- getCells(rows, colIndex=grep('^Uniprot$', names(df)))
invisible(sapply(cells[-1], function(x) {
addHyperlink(x, getCellValue(x))
setCellValue(x, 'Uniprot Link')
}))
rMQanalysis::saveWorkbookMQ(excel_wb, 'uniprottest.xlsx')
r macos xlsx excel-2011
r macos xlsx excel-2011
asked Nov 16 '18 at 10:28
drmarioddrmariod
4,61512767
asked Nov 16 '18 at 10:28
drmarioddrmariod
4,61512767
edited Nov 16 '18 at 11:56
drmariod
asked Nov 16 '18 at 10:28
drmarioddrmariod
4,61512767
asked Nov 16 '18 at 10:28
drmarioddrmariod
4,61512767
asked Nov 16 '18 at 10:28
drmarioddrmariod
4,61512767
4,61512767
add a comment |
add a comment |
1 Answer
1
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For some reason, after a restart of the computer, everything works. Not sure what and if something changed.
answered Nov 21 '18 at 7:55
drmarioddrmariod
4,61512767
add a comment |
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1 Answer
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active
oldest
votes
1 Answer
1
active
oldest
votes
active
oldest
votes
active
oldest
votes
For some reason, after a restart of the computer, everything works. Not sure what and if something changed.
answered Nov 21 '18 at 7:55
drmarioddrmariod
4,61512767
add a comment |
For some reason, after a restart of the computer, everything works. Not sure what and if something changed.
answered Nov 21 '18 at 7:55
drmarioddrmariod
4,61512767
add a comment |
For some reason, after a restart of the computer, everything works. Not sure what and if something changed.
answered Nov 21 '18 at 7:55
drmarioddrmariod
4,61512767
For some reason, after a restart of the computer, everything works. Not sure what and if something changed.
answered Nov 21 '18 at 7:55
drmarioddrmariod
4,61512767
answered Nov 21 '18 at 7:55
drmarioddrmariod
4,61512767
answered Nov 21 '18 at 7:55
drmarioddrmariod
4,61512767
answered Nov 21 '18 at 7:55
drmarioddrmariod
4,61512767
4,61512767
add a comment |
add a comment |
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